Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01219 ATGGAGTGGCGTAGAGGCCACACCATAGGCCATGGCTCATCAGCCACCGTGTCCCTCGCCACCTACCACGGAGGAATCTTCGCCGTAAAGTCATCGGAGCTATCATGTTCAGAGTCTCTGAAGAGAGAACAGAGAATTTTGTCTTCTCTATGTTCTCCTTATGTGGTTACCTATAAAGGGTGTGACATTACCATGGAGAACAACAAGCAGTTATACAATCTCTTCATGGAGTACATGCCCTTTGGCACTCTTGTTCAAGAAACACGCCGGCGCGGTGGCCGGCTTGATGAACCGGCGATAGCATGCTACACAAGACAAGTTTTGCAGGGGCTAGAGTATTTGCATTCAAAAGGGGTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAGATAGAGCCAAAGTTGGAGACTTTGGATGTGCTAAAAGTGTCACTGGTGATGTGGCAGCGCCAATCAGCGGCACGCCGGTGTTTATGGCCCCGGAGGTGGCGCGTGGGGAAAAACAAGAGTGTCCTAGTGATATTTGGTCACTTGGGTGTACTGTGATTGAAATGGCCACTGGTGCTTCACCATGGCCTAATGTTGCTGACCCTTTTTCAGTTCTTTACCATATTGCATATTCCAATAAGGTGCCTGAGATTCCATGTTTTCTATCAGAGAAAGCAAAGGATTTCTTGATGAAGTGTTTTAGGAGGAATCCAAAAGAGAGGTGGGCAGCTAGTAAACTTTTGAAGCATCCATTTCTTGATGAAGAATTATGTTCCAACACTAAGCAAGTTCTTGAATCAAATTCAAGTTCACCAACAAGTATTCTTGACCAATGCTTTTGGAGTTCTGTTGAAGAATCACAAAGCCTTGGTAATTTGATTGTTGAAAATTCACCTGCTGACAGGGTGAGAAGGTTAGCTGCATTTTCAGGGGAGCCTTGTTGGGCATGGCATCATGATGATGATGATGAGAATTGGACCACAACAAGAGGGAATGAGGCAGTGGCTGAAGTTGGAGCATTTTACAATTGTGGGTCAGAGATAGCTTCAACTAGTGAAGTGAATCAACAAGAGTTGGTAAAAAGTAATGTAAGAGATAGAATTAGTGGTCATTTTTGTCAGGATCACAAGTGTAGGGATGCTAGTGTTGTAATTAGTCATCTCAATTTTGAGAGAGGCATCACTAAGATGCTACTTCCTTCAACATTAGATTTTTTCTAA 1218 0.4392 MEWRRGHTIGHGSSATVSLATYHGGIFAVKSSELSCSESLKREQRILSSLCSPYVVTYKGCDITMENNKQLYNLFMEYMPFGTLVQETRRRGGRLDEPAIACYTRQVLQGLEYLHSKGVVHCDIKGANILIGEDRAKVGDFGCAKSVTGDVAAPISGTPVFMAPEVARGEKQECPSDIWSLGCTVIEMATGASPWPNVADPFSVLYHIAYSNKVPEIPCFLSEKAKDFLMKCFRRNPKERWAASKLLKHPFLDEELCSNTKQVLESNSSSPTSILDQCFWSSVEESQSLGNLIVENSPADRVRRLAAFSGEPCWAWHHDDDDENWTTTRGNEAVAEVGAFYNCGSEIASTSEVNQQELVKSNVRDRISGHFCQDHKCRDASVVISHLNFERGITKMLLPSTLDFF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01219 405 FunFam Mitogen-activated protein kinase kinase kinase 17 2 303 - -
Rops3g01219 405 CDD STKc_MAPKKK 2 252 - -
Rops3g01219 405 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Rops3g01219 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Rops3g01219 405 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 294 - -
Rops3g01219 405 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Rops3g01219 405 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
Rops3g01219 405 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01219 405 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01219 405 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01219 Rops-Chr3 17281731 17282948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01219 3 342 MAP Kinase Kinase Kinase AT5G55090 47.709 4.41e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops3g01219 Pkinase 9.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01219 K20716 - gmx:100794648 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01219 3 17281731 17282948 Rops11g01076 11 15825269 15830478 ECH
Rops3g01219 3 17281731 17282948 Rops3g01219 3 17281731 17282948 ECH
Rops7g00844 7 11272036 11273229 Rops3g01219 3 17281731 17282948 PCT