Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01218 ATGGATTCAGATCCAATTGGTAACTTTTTCCTCCACAAGCCAATTGTTCTCAACTCTTTCCCAGAAGACATAAACCAACCCAAGTGGAAACTTAGTCCCAACAACAACAACAACATGGAGGCTACAGTTAGCACCAAAGGGTCTTCTTCACCCACCACAACTATCCCATTTCAAGTCAACCTTAGCTGTTCTAATGACAACCACACCTCCCTAACAACATTTCATGACATGAGAAAAGAGATGGACTTCTTCAAGGACAAGAACAACAGTGATGACAAGGTTGTCTCTGCCTCTGCCCCAGATAATGATCACACACATGATCATTCCACCACTCCTCCTGTGTTGGAATTCAAAGTAAACACTGGTTTGAATCTTCTTACTACCAACACTGGCAGTGATCAATCTATGGTGGACGATGGCATATCACCAAATTCAGATGATAAACGAGCTAAGAATGAGCTGGCTGTTCTTCAAGCTGAGATTGAGCGAATAAAGGTGGAGAATCATCGGTTGAGGGAGATGCTTGAACATGTTCATACCGATTACAAAGCCTTGCAGATGCATTTGATGAATTTGATGCAGGAGCAGAAGGCTGAAGATGCTGAAGAAGAGGAAGTGTTTGATGGCAAAATTGAAGAGAAGAAGCAAAGTGAGAATGGTGGGGTATTGGTGCCAAGACAGTTTATGGATCTTGGGTTGGCTACTAATGCTGAAACGGATGAACCCTCTTCTTCATCAGTGGGAAGAAGTCAAGATCCATCAGGATCATCAGGGAACAACAATAATATAGAAGTAGGTTCCAAGGAATTAGGCACCAATAAGAATAGGAATGTTAGTGATGAAGGACCTGTGTATGATCAAGAGAAGAAGGAATTTGGTAGGGTGATTGAAAGAGAGGATAGCCCCTCAGATCATGCTTTTGCTGCTGATAAAATTCCAAGGTTTAGTCCTCCAAAAGATGTTGATCAAGCTGAGGCCACCATGAGGAAAGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCCATGATCACTGATGGGTGTCAATGGCGAAAGTATGGACAGAAGATGGCCAAAGGAAACCCTTGTCCTCGAGCTTATTACCGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCTGAAGACAGAACAGTCCTTATTACAACATATGAAGGCAATCACAATCACCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGTTACTTTCAGGATCAATGTCAAGCAGTGATGGCATAATGAATGCTAACTTCCTCACAAGGACACTTCTTCCATGCTCTTCTAGCATGGCAACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTAGACCTTACTCAATCACCAAATCCTCTACAGTTCCCAAGGCCTCCAAGCCAGTTACAAATTCCCTTCCCAGGTGTCCCTCAGAATTTTGCCAATTCCACAGCATCTTTAATTCCTCAGATATTTGGTCAGGCACTTTACAACCAATCAAAGTTTTCTGGTCTGCAAATGTCACAAGATGCAGCAGCTGACACTTCTCAATTGGGTAATCACACTCAACAACCAAACCTTGCTGACACAGTTACTGCTGCCATTGCTTCTGATCCAAATTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCATCCAAACAACAACAGTACTACCAATAATAATGGCAATAGCAACAGCAATGGCAATGCCAATATCACAAGTAGCAACAACAATAGCAATGGAAAGCAATAA 1809 0.4323 MDSDPIGNFFLHKPIVLNSFPEDINQPKWKLSPNNNNNMEATVSTKGSSSPTTTIPFQVNLSCSNDNHTSLTTFHDMRKEMDFFKDKNNSDDKVVSASAPDNDHTHDHSTTPPVLEFKVNTGLNLLTTNTGSDQSMVDDGISPNSDDKRAKNELAVLQAEIERIKVENHRLREMLEHVHTDYKALQMHLMNLMQEQKAEDAEEEEVFDGKIEEKKQSENGGVLVPRQFMDLGLATNAETDEPSSSSVGRSQDPSGSSGNNNNIEVGSKELGTNKNRNVSDEGPVYDQEKKEFGRVIEREDSPSDHAFAADKIPRFSPPKDVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSSDGIMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRPPSQLQIPFPGVPQNFANSTASLIPQIFGQALYNQSKFSGLQMSQDAAADTSQLGNHTQQPNLADTVTAAIASDPNFTAALAAAITSIIGGAHPNNNSTTNNNGNSNSNGNANITSSNNNSNGKQ* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01218 602 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 125 583 IPR044810 GO:0003700
Rops3g01218 602 MobiDBLite consensus disorder prediction 237 280 - -
Rops3g01218 602 MobiDBLite consensus disorder prediction 196 224 - -
Rops3g01218 602 Gene3D WRKY domain 329 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops3g01218 602 ProSiteProfiles WRKY domain profile. 339 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops3g01218 602 MobiDBLite consensus disorder prediction 237 288 - -
Rops3g01218 602 Coils Coil 147 174 - -
Rops3g01218 602 Pfam WRKY DNA -binding domain 346 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops3g01218 602 MobiDBLite consensus disorder prediction 569 602 - -
Rops3g01218 602 FunFam probable WRKY transcription factor 31 329 406 - -
Rops3g01218 602 SUPERFAMILY WRKY DNA-binding domain 337 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops3g01218 602 MobiDBLite consensus disorder prediction 89 114 - -
Rops3g01218 602 SMART WRKY_cls 344 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops3g01218 602 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01218 Rops-Chr3 17261134 17263981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01218 80 580 WRKY Transcription Factor Family AT1G62300 49.710 2.39e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops3g01218 WRKY 4.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01218 - - gmx:100127384 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01218 3 17261134 17263981 Rops11g01078 11 15843862 15846403 ECH
Rops3g01218 3 17261134 17263981 Rops3g01218 3 17261134 17263981 ECH
Rops7g00842 7 11249712 11252373 Rops3g01218 3 17261134 17263981 PCT