Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01209 ATGCTTAATGGTATGATGGATCCCGAGTTGATCAGAATCGCTCAGGAACAAATGAGTCGGATGTCACCCGCTGAGTTGACTCGGATCCAACAACAGATGATGTCTAATCCAGATTTGATGAGGATGGCCTCTGAAAGCATGAAAAACATGAGCTCTGAAGACTTGAAACGCGCTGCCGAACAGTTAAAGCATACCAGACCAGAAGAAATGGCTGAGATTGGTGAGAAGATGGCTAATGCATCACCTGATGAAGTAGCAGCTATGGGTGCCCGTGTTGATGCTCAGATCAAATATCAATTGAATGCCGCCGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGGAAGTTCGATGATGCTTTGCAGAAGTATATGCTTGCTAAGGACAACATTAAAGACTTTCCATCTTTACAAAGTAGAAAGCTTCTTTTGGCGTGCTCTCTTAACTTGATGTCCTGTTACTTGAAGACAAGGCAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGTCATATGATGCGAAGAACCTTAAGGCTCTCTATCGAAGAGGTCAAGCATACAAGGAAATAGGCCTGCTAAAGGATGCTGTTACTGATTTGAGCAAGGCACTTGAAGTGTCCCCTGATGATGATACAATTGCAGAGATTTTACAGGATGCCAAGGAAAAGTTGGCAAAGGAAGGTGGTGATTCTGCACCTGGAAGACTAGTAATTGAAGAAATTACTGAAGAAGTCGAGAATGTGCCTTCTGGAAACAACAGAAGCTCTTCTATGGAACAAACAGTGGTTCAACCAAAAAAATCTGGTGACTCCTTTAAGAGTAGCAGTGTAGCTAACAATGGAAATCCAAAAACTAATACAGACAGTTTGGATACATTGAGACAAGATCCAGATGCTATCAGATCATTCCAAAACTTCATTTCAAATGCCGATCCTGCCACTCTGGCTTCTTTGAACCCTGGGCAATCCAAAGACATGTCTCCAGATATGATTAAAGCTACATCAGGTATGATTGGCAAGATGTCAAATGAGGAACTTCAAAAAATGCTTGACATGGCATCCTCATTTCAAGGGGACAACCCATTTTCGAGAGGAGGTTCCCCTGATTCTCCTTTCAACCCTGGATCAATGCCTCCCAATGTGACACCTGACATGTTTAAAACAGCGAGTGATATGATAAGTAAAATGTCAGCAGATGACCTTAAGAAGATGTTTGAAATGGCATCTGCACTGAAAGGAAAAGAATCCATTTCATCATCAGCAGCTGCAGACATGAATGAAAGAAATGTTTCCCAGGCAAACTTCCCAACCTCAAGTACTAATGGAAGTCATGCTTCTGGAGAATCAAGTTCTCCTCACAATGCATTTTCAAATATGAGAAATGCTTCTCCGTCAAACTTCCCTTCCTCAAGTACTGATTTGCAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGATTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAGAACAATTTGGTTTCAAGCTTTCACCAGAAGAGGCAGTAAAAGCTCAGCAAGCCATGTCATCCATGTCACCAGAGAGCTTGGATAAAATGATGCTTTGGGCTGACAGGGTTCAAAGAGGAGTTGAAGGTGTAAAAAAGACAAAGAACTGGTTGCTAGGGAAACCAGGCATGGTCTTTGCACTGTGCATGCTCATTTTGGCTATCATTCTTCACCGGTTGGGCTTCATTGGTGGCTAG 1767 0.4222 MLNGMMDPELIRIAQEQMSRMSPAELTRIQQQMMSNPDLMRMASESMKNMSSEDLKRAAEQLKHTRPEEMAEIGEKMANASPDEVAAMGARVDAQIKYQLNAAEMLKKQGNELHNQGKFDDALQKYMLAKDNIKDFPSLQSRKLLLACSLNLMSCYLKTRQYDECIKEGSEVLSYDAKNLKALYRRGQAYKEIGLLKDAVTDLSKALEVSPDDDTIAEILQDAKEKLAKEGGDSAPGRLVIEEITEEVENVPSGNNRSSSMEQTVVQPKKSGDSFKSSSVANNGNPKTNTDSLDTLRQDPDAIRSFQNFISNADPATLASLNPGQSKDMSPDMIKATSGMIGKMSNEELQKMLDMASSFQGDNPFSRGGSPDSPFNPGSMPPNVTPDMFKTASDMISKMSADDLKKMFEMASALKGKESISSSAAADMNERNVSQANFPTSSTNGSHASGESSSPHNAFSNMRNASPSNFPSSSTDLQEQMRNQMKDPAMRQMFTSMIKNMSPEMMANMGEQFGFKLSPEEAVKAQQAMSSMSPESLDKMMLWADRVQRGVEGVKKTKNWLLGKPGMVFALCMLILAIILHRLGFIGG* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01209 588 MobiDBLite consensus disorder prediction 362 389 - -
Rops3g01209 588 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 363 - -
Rops3g01209 588 SUPERFAMILY TPR-like 95 227 IPR011990 GO:0005515
Rops3g01209 588 Gene3D Tetratricopeptide repeat domain 91 233 IPR011990 GO:0005515
Rops3g01209 588 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Rops3g01209 588 SMART tpr_5 180 213 IPR019734 GO:0005515
Rops3g01209 588 SMART tpr_5 146 179 IPR019734 GO:0005515
Rops3g01209 588 SMART tpr_5 103 136 IPR019734 GO:0005515
Rops3g01209 588 MobiDBLite consensus disorder prediction 435 480 - -
Rops3g01209 588 MobiDBLite consensus disorder prediction 247 295 - -
Rops3g01209 588 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Rops3g01209 588 MobiDBLite consensus disorder prediction 249 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01209 Rops-Chr3 17129096 17133997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01209 99 227 Calmodulin-binding Proteins AT5G48570 34.815 5.44e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01209 - - gmx:100800315 947.577