Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01205 ATGGTTGTGGAGAGGGCGCACAGTGAGTCACAAGGCACCTTAGGATCTCTTCAGTCTTTATGTTGGGGTTCTACAGTTTTTGACAGAATTGAGAGCTCCTTCAGTGGGTCTTTGTTGGATGCATATGGAGTAAGGTTTATTTTTGGCGTCACAACATTGTTTCCTCTGATAACAGCTGTAGTTATTGTTCTTGTGAAAGAACAACCAATGTTTGGGACAGCAAGAGGGAAAAATCTGGTTTTTGCCATGTCTGAGATGTTGGAAAGTTCAAAACAGAGCATTATTCAGCAGTTGGGTTTTTTAAGACAGCCTAGTGTTTTTCTTCCCACTTTGTTTATTTTCTTGTGGCAAGCAACTCCATGGTATGACTCTGTTATGTTCTACTTCAACACAAATTCTCTTGGTTTTACCCTTGAGTTTTTCGGATGTGCCAAGTTTGTTTCCTTGATTGCATCTCTCCTTGGTTTTGGACTTTATAATGGGTTTCTGAAGAATGTCCCTTTGCAGAAAATATTTCTTGTAACAACCATTTTAGGGTCAGTTCTTGGGATGAGTGGCTTAAGTGATGGGTGGTTTGCGATGGGTGATTCATTAATTTTCACTATTTGGAGTCAGACTTCTTTCATGCCCATTCTTGTGGTAGCAACAAGACTAAAAACTATAGTTATGGATCATTCTATGATTCTCTTATGGATTGTTAGTCATGTTGTTACTTCATATATTATTGCCTTCATTTTAAACTGGGGGTTCATGCTTCTTGTCTTAGTCACATATCCTCTGATCATTAGTGGTCACAGCAGCAATAAACTTTTCTTGCAAGGCTTTGCTAGCAACCTAAGAAAATCATATCTAAAAGCCAACATGTTGGCTAGGGAGGCTGCAAGTAATATACAAATGGTGGCTGCATTTTGTTCTAAAGAAAAGTTCCTTGACCTTTATGTTGATCAACTTGTTGAGCCTTCTAAGCATTCATTCACACATGGTCAAATTGCTGGCATATATTATGGCATTTCCCAGTCCTTTATTTACTCATCTCATGGCCTTACCCAACAGCTTTTTGGTTTTAATGCTGGAAAGTTGAGAATGGATGAGAGGATTGATCTTAGCATGAGTGATCCTGATCTTGTTCCACTTCTTATCCAGGAAAATTATATTAATTATCGACCAAGCTTGGCAGGTAAGGATGACAGCGGTATAAAACGCATGGACCTGATTGCCCGAGCTGCTGAGTCCATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGGCAGTGGCAGCTCTCGCAAACTAGTTCTGTTGCATCATGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAACACTTGAACAGGGAGAACGAAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCCGCAACGGGCAAAAACATGAGGCTTTTGGATGACCTGCATGTTCACATTCTTGCATCTCGTGAGTCTAGTTCAGGAAGGGATACTATTCGCTTGGAATACCTTACTCTTCTTCTTAAACAATTGATAGAACCTCTACGAGTCCTGCCTAAGGCTGAAGCTGTTCAGACAGTTGTGGACTTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATTGTAGAGTTATCAAAATTCAAGGGTCATCCCAATCCGCTAGATGGCATACAGCCTGCTGTTAAGTCAGCATTGACCAAAGCATACAAAGAGCAAAGCAAATCTCGGATGGTTCGAGCTGCTGATCTAGTCAATCTTCCTGGAGTAAAAAAGGTCCCAAAGAAGCGCATTGCTGCTATTCTAGAACCAGCTGATGAAGGAGTAGAACAAAGTGGAGACACCTTAGAAGAGAGTGAAGAGGAGAACGCCTCTGACACAGAGGAGTTGGGCACCAACACTGGTGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAATTCAAAGGCCATGCAAGTGCAATTGGAATTGAAGGGAACGGGAAGTGCAAGTTCCAAAAAGACATCTGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGCACAGAAGGATGCTCAAACGTCAAAGGCTACTGCAAAAAGAAAGAGATGA 2094 0.4136 MVVERAHSESQGTLGSLQSLCWGSTVFDRIESSFSGSLLDAYGVRFIFGVTTLFPLITAVVIVLVKEQPMFGTARGKNLVFAMSEMLESSKQSIIQQLGFLRQPSVFLPTLFIFLWQATPWYDSVMFYFNTNSLGFTLEFFGCAKFVSLIASLLGFGLYNGFLKNVPLQKIFLVTTILGSVLGMSGLSDGWFAMGDSLIFTIWSQTSFMPILVVATRLKTIVMDHSMILLWIVSHVVTSYIIAFILNWGFMLLVLVTYPLIISGHSSNKLFLQGFASNLRKSYLKANMLAREAASNIQMVAAFCSKEKFLDLYVDQLVEPSKHSFTHGQIAGIYYGISQSFIYSSHGLTQQLFGFNAGKLRMDERIDLSMSDPDLVPLLIQENYINYRPSLAGKDDSGIKRMDLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQRETLEQGERNFNRFGGWLGKNSATGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLLLKQLIEPLRVLPKAEAVQTVVDFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSKSRMVRAADLVNLPGVKKVPKKRIAAILEPADEGVEQSGDTLEESEEENASDTEELGTNTGEKLKSELQSLNSKAMQVQLELKGTGSASSKKTSGGRGKGASASAQKDAQTSKATAKRKR* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01205 697 Pfam ABC transporter transmembrane region 217 345 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01205 697 FunFam Replication factor C subunit 1 344 453 - -
Rops3g01205 697 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 215 345 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops3g01205 697 MobiDBLite consensus disorder prediction 613 630 - -
Rops3g01205 697 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 348 668 - -
Rops3g01205 697 Coils Coil 638 658 - -
Rops3g01205 697 Pfam BT1 family 76 218 IPR039309 -
Rops3g01205 697 Pfam Replication factor RFC1 C terminal domain 412 574 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Rops3g01205 697 SUPERFAMILY post-AAA+ oligomerization domain-like 349 488 IPR008921 GO:0003677|GO:0006260
Rops3g01205 697 MobiDBLite consensus disorder prediction 605 697 - -
Rops3g01205 697 Gene3D - 345 454 - -
Rops3g01205 697 MobiDBLite consensus disorder prediction 631 688 - -
Rops3g01205 697 SUPERFAMILY ABC transporter transmembrane region 218 348 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01205 Rops-Chr3 17051761 17057614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01205 351 652 Core DNA Replication Machinery Family AT5G22010 70.164 1.32e-144 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01205 K10754 - gmx:100790070 549.666