Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01204 ATGAGTGATATAAGAAAGTGGTTTATGAAATCACATGACAAGGGCAACAATGCCGGTAACTCTAAACCTTCTAATCAAGCGAAGCCTTCTACGGATAAACCCAACCAGGAGAAAACGTTGCCTGAAGGTCAAGAAAGTTCAGGCAGAAGAATAACTAGCAAATATTTTAATAAGGATAAACAAAAGCCGAAAGATGAGAAAGAAATGCAGGAGCTTCCTGCGAAAAGAAAGAATGTGAAGGACAGCGAGGAATTACTGGAGCCCCGTCTTTCGAAGAAAATGAACAAAACTAATGAGGATGATGGAAATGATGACTTTGTCTTGCCCACCTCTAAAAAGAAGTTAGCTGATTCCACACCAACAAAAAAGTTGAAGAGTGGATCAGGTAAGGGGATCCCCCAGAAATCTGCAGATTTGGACGAAAGTGATGAAGATGATGAGAAAGATGCTGTGTCTACCATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCTACACAATCAACTGGTGGAAGAGGCAGAGGGGGTGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAATCGGTTTAACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAGGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACCGGATCAGTCAGCAAGAAAACAAATTATTTGTTATGTGATGAAGATATTGGGGGGAGGAAGTCTTCTAAAGCTAGAGAGCTAGGAACTTCATTCCTCACAGAGGATGGGTTGTTTGATATGATTCGTGCATCAAAACCTAGAAAAGCTCCTTCACAAGAAGAATGCAAGAAATCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGGTTCTCCAAAAGCCCAAGCAAAGGTCTCTTTATCTTCACGCTTGCCTTCCAACCAAGCCAAGCCAAAGACAGCAACTACTGCTCAGTCTTCTTTGATGTGGACAGAGAAACATCGACCTACAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTCACAGCTTCGAAACTGGTTGAAAGCTTGGCATGAGCAATTTTTGGACACTGGTAACAAAAAACACGGAAGAAAGCAAAATGACTCTGCTGCCAAAAAAGCTGTTTTGTTAAGTGGAACCCCTGGTATAGGAAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCAATAGAGGTTAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAGATTGAAAAAGGAATTAGCGGAAGCAATGCAAATTCTATCAAGGAACTTGTAACCAATGAGGCCCTCGGCACTGATATGGATCGGTCAAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGATCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTTAGTTTTCGAAAGCCAACAAAGCAACAGATGGCAAAGAAGTTGATGTATGTTGCAAAGGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAAGAACTAGCCGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGTTACACTATATGAGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGAAGCGCTTGCTTACCAGTGCGAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGTATGATATTCATATCATCTCTGTACTACACTTAAACCATGCTTTTACTGCCATACACTTAATTCTAATTGTGTGTTTGGCTTACATTGTTTTCCAGTATACTTATAAATAG 1938 0.4159 MSDIRKWFMKSHDKGNNAGNSKPSNQAKPSTDKPNQEKTLPEGQESSGRRITSKYFNKDKQKPKDEKEMQELPAKRKNVKDSEELLEPRLSKKMNKTNEDDGNDDFVLPTSKKKLADSTPTKKLKSGSGKGIPQKSADLDESDEDDEKDAVSTIKSGGRGRGGRGASTQSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLIGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKARELGTSFLTEDGLFDMIRASKPRKAPSQEECKKSVNKAVAVASQSKGSPKAQAKVSLSSRLPSNQAKPKTATTAQSSLMWTEKHRPTDPKDIIGNQSLVSQLRNWLKAWHEQFLDTGNKKHGRKQNDSAAKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGTDMDRSKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKLMYVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRKRLLTSAKDEDISPFTAVDKYDIHIISVLHLNHAFTAIHLILIVCLAYIVFQYTYK* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01204 645 Gene3D - 341 529 IPR027417 -
Rops3g01204 645 CDD AAA 390 493 - -
Rops3g01204 645 Gene3D BRCT domain 180 282 IPR036420 -
Rops3g01204 645 SMART AAA_5 393 531 IPR003593 GO:0016887
Rops3g01204 645 MobiDBLite consensus disorder prediction 304 345 - -
Rops3g01204 645 MobiDBLite consensus disorder prediction 1 204 - -
Rops3g01204 645 CDD HLD_clamp_RFC 530 590 - -
Rops3g01204 645 FunFam Replication factor C subunit 1 179 282 - -
Rops3g01204 645 MobiDBLite consensus disorder prediction 187 202 - -
Rops3g01204 645 Pfam BRCA1 C Terminus (BRCT) domain 207 280 IPR001357 -
Rops3g01204 645 SUPERFAMILY BRCT domain 203 284 IPR036420 -
Rops3g01204 645 SMART BRCT_7 205 283 IPR001357 -
Rops3g01204 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 590 IPR027417 -
Rops3g01204 645 ProSiteProfiles BRCT domain profile. 203 284 IPR001357 -
Rops3g01204 645 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 610 - -
Rops3g01204 645 Gene3D - 530 600 - -
Rops3g01204 645 FunFam Replication factor C subunit 1 530 601 - -
Rops3g01204 645 CDD BRCT_RFC1 203 281 - -
Rops3g01204 645 FunFam Replication factor C subunit 1 341 529 - -
Rops3g01204 645 PIRSF RFC1 1 176 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Rops3g01204 645 PIRSF RFC1 163 621 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Rops3g01204 645 MobiDBLite consensus disorder prediction 304 356 - -
Rops3g01204 645 Pfam ATPase family associated with various cellular activities (AAA) 397 496 IPR003959 GO:0005524|GO:0016887
Rops3g01204 645 MobiDBLite consensus disorder prediction 14 51 - -
Rops3g01204 645 MobiDBLite consensus disorder prediction 52 120 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01204 1 609 Core DNA Replication Machinery Family AT5G22010 67.690 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01204 K10754 - gmx:100790070 970.689