Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01197 ATGTCAATGGACTTGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCGGTTTACTAACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGGTCATCTTCAACATGTAACAAAAATGCAGCATTTGAGCCAATAGAGCATGAACAACCTAGGATTCCTCCTATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGGTTCATCAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACTGGGCACATTTCCCTCATATTCGCTTTGGGAAGCAAGGAAAGTTGGACCAGGGAGAAGGGACTGAAAAGTCTAATGGATTCTACTGA 531 0.4482 MSMDLMATERVCYVHCNFCNTILAVSVPYSGLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQHLSFEEPSSKELGSSSTCNKNAAFEPIEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIRFGKQGKLDQGEGTEKSNGFY* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01197 176 CDD HMG-box_SF 113 149 - -
Rops3g01197 176 Gene3D High mobility group box domain 98 154 IPR036910 -
Rops3g01197 176 SUPERFAMILY HMG-box 104 153 IPR036910 -
Rops3g01197 176 MobiDBLite consensus disorder prediction 74 90 - -
Rops3g01197 176 Pfam YABBY protein 7 158 IPR006780 GO:0007275
Rops3g01197 176 MobiDBLite consensus disorder prediction 74 110 - -
Rops3g01197 176 PANTHER PROTEIN YABBY 6-RELATED 1 161 IPR006780 GO:0007275
Rops3g01197 176 FunFam axial regulator YABBY 5-like 97 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01197 Rops-Chr3 16915136 16921402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01197 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 63.102 4.27e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops3g01197 YABBY 2.4e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01197 K25796 - gmx:100500091 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00462 7 5791668 5799566 Rops3g01197 3 16915136 16921402 PCT