Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01182 ATGAGAGATCCTGTCACGGTGTGCACAGGAATCACTTATGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAACAACAACACCACCTGCCCTGTCACTAAGCAATCTTTGTTACACACAGATCTTACCCCAAACCACACTCTACACAGGTTGATCCAAGCTTGGTGCACCAGTAATGCTTGGCTTGGAATTGAAGATATTCCAACTCCAAAACCAACCATTGACAAAACTCATGTTGTCAAACTCATCTGTGAAGCAAAGAGGTTCCCAGACAAGCAGCTCAAATGCCTTAGGAAGCTTCAATCTATTGCTTTTGAAAGTGAAAGTAACAGAAAGTGTTTGGAGTCTGCAGGGGTAATAGATTTCTTGGCTTCAACCATGATGAAAATCAGCCAAGAAGATTCAACTTTTATTAGTGAAGTTGCTATTGAAGTCTTATTTCAACTGAATTCTTCTGGGGCTCAATTTGAAAATCTAATAAACAATGAGGGCATTCAATTTATTGAGTCTTTGTTTCAGGTCTTGAAGCTTGGGAACTACCAGTCTAGAACTTATGCAATTATGTTATTGAAGTCAGTGTTTGAGGTGGCTGGTCCAACTCAATTAAACAGTGTCAGTACTGAACTGTTTGTGGAAATAATGAGAGTTCTAAGGGATCAGATTTCACATCAGGCTTCTAAGACAGCATTGAAGCTTCTTGTGAAGTTGTGTTCATGGGGTAGAAACCGAGTCAAAGCAGTTGAGGGTGGTGCTGTTTTAGTCCTTGTGGAGCTTCTTCTTGATGTCACTGAAAGAAGGGCAGGTGAACTCATGTTGATAGCTTTGGATAGACTTTGTGGCTGTGCAGAAGGAAGGGCTGAATTGTTGAACCATGGAGCTGGATTGGCCATTGTATCAAAGAAAATTCTAAGAGTTTCTCATGTGGCAACTGATAGAGGGGTTAGAATTTTGACCTCTATTTGTAGGTATTCAGCTTCCCCTAGAGTCCTTCAAGAAATGTTGGTATTGGGGGCTGTGTCCAAGTTATGTTTGGTGCTTCAAGTTGAAGGTAATTTCAAGGCCAAGGAAAGGGCCAAGGAGACACTCAAATTGCACTCTTTGGATTGGAAGAATTCTCCATGTATTCCCCACCCTTTGCTTTCATCTTATCCATGA 1158 0.4093 MRDPVTVCTGITYDRENIERWLFSCNNNTTCPVTKQSLLHTDLTPNHTLHRLIQAWCTSNAWLGIEDIPTPKPTIDKTHVVKLICEAKRFPDKQLKCLRKLQSIAFESESNRKCLESAGVIDFLASTMMKISQEDSTFISEVAIEVLFQLNSSGAQFENLINNEGIQFIESLFQVLKLGNYQSRTYAIMLLKSVFEVAGPTQLNSVSTELFVEIMRVLRDQISHQASKTALKLLVKLCSWGRNRVKAVEGGAVLVLVELLLDVTERRAGELMLIALDRLCGCAEGRAELLNHGAGLAIVSKKILRVSHVATDRGVRILTSICRYSASPRVLQEMLVLGAVSKLCLVLQVEGNFKAKERAKETLKLHSLDWKNSPCIPHPLLSSYP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01182 385 PANTHER WDSAM1 PROTEIN 1 377 IPR045185 GO:0061630
Rops3g01182 385 SUPERFAMILY RING/U-box 1 64 - -
Rops3g01182 385 CDD RING-Ubox_PUB 1 43 IPR045210 -
Rops3g01182 385 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Rops3g01182 385 Gene3D - 79 369 IPR011989 -
Rops3g01182 385 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Rops3g01182 385 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Rops3g01182 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Rops3g01182 385 SUPERFAMILY ARM repeat 91 363 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01182 Rops-Chr3 16730807 16731964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01182 1 385 U-box Gene Family AT3G52450 49.519 6.07e-137 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01182 - - gmx:100786877 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00481 7 6045602 6046753 Rops3g01182 3 16730807 16731964 PCT