Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01181 ATGGAGGACCCTGTGACAACCGTGACAGGCATAACATATGAAAGAGAAAGCATTGAACGGTGGTTGCTTAAGGCCAAAGCATGTGTATGCCCAGTTACAAAACAACCATTACCAAGAAGCTCAGAGTATTTGACACCAAACCACACACTACGAAGGTTAATTGAGGCATGGTGCTCGTCAAATGCAGCCAAAGGTGTTGATCAAATTGGAACCCCAAAAACCCCTCTTGATAAGATCCAAGTTCAAAAGCTTGTGAAGGACCTTGAGGTTCCTCACTGTTACAAAAGGGCATTGGAAAAATTGCATGAGCTTGCTACACAAAGTGAGAGGAATAGAACATGCATGGTTGAAGCAGGGGTAGCTAAGGCTATGGTTATGGTGATTAACAAGAATTTCAAGGAAGGTAACACCACTTGCCTAGAAGAAGCTCTTAGAATTGTTCATCTTCTTTGGAATAATCCAACCATGGCCAACCACAACATGAAGCCACTTGTTGGAGACAACTTTGACTTCATCAACTCTTTGACTTGGATTTTGCAACTTCACATGGATAACAACAATGTGAAGATGGTAAATGAAGCAATGCCCCTATTGAAGTTAACAATTGAAGTTGCGGATTCAACCTTGTTAGGGAATTTAAGCCTTGAATTCTTCAGAGAAATCGTGAGAGTACTAATAAATAGAGCACTCTCTCAACATGCTATTAAATCAGCTTTGCTTGTTCTTATACAAACGTGCCCTTTGGGTAGAAACAGAACGAGGATCGTGGAAGCAGGTGCAGTATCAGAACTCATTGAGCTTGAGCTTGAAAAACCAGAGAAGAACCTAACGGAACTCATATTTAACCTTCTGGCTCATTTGTGTTCTTGTGCTGATGGAAGAGAACAATTTCTGAGACATGCTGCAAGTATTGCAGTGATTTCAAAAAGGATTTTGAGGGTTTCTGCTGCAACTGATGATCGAGCAATTCATATATTTTCTGTGATTGCAAGGTATTCAGCATCAAATGAGGTTGTTCCTGAGATGTTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCTGATTGTGCTTCATATTTGAAAGAAAAAGCAAGAGATGTCCTCAGGTTACATTCCAAAGTTTGGAATAATTCTCCTTGTATACAAGTGTATTTGTTAACTAGGCACCAAAGATGA 1185 0.4051 MEDPVTTVTGITYERESIERWLLKAKACVCPVTKQPLPRSSEYLTPNHTLRRLIEAWCSSNAAKGVDQIGTPKTPLDKIQVQKLVKDLEVPHCYKRALEKLHELATQSERNRTCMVEAGVAKAMVMVINKNFKEGNTTCLEEALRIVHLLWNNPTMANHNMKPLVGDNFDFINSLTWILQLHMDNNNVKMVNEAMPLLKLTIEVADSTLLGNLSLEFFREIVRVLINRALSQHAIKSALLVLIQTCPLGRNRTRIVEAGAVSELIELELEKPEKNLTELIFNLLAHLCSCADGREQFLRHAASIAVISKRILRVSAATDDRAIHIFSVIARYSASNEVVPEMLRVGAVSKLCMVMQADCASYLKEKARDVLRLHSKVWNNSPCIQVYLLTRHQR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01181 394 SUPERFAMILY ARM repeat 93 371 IPR016024 -
Rops3g01181 394 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Rops3g01181 394 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Rops3g01181 394 PANTHER WDSAM1 PROTEIN 1 385 IPR045185 GO:0061630
Rops3g01181 394 Gene3D - 81 377 IPR011989 -
Rops3g01181 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Rops3g01181 394 SUPERFAMILY RING/U-box 1 66 - -
Rops3g01181 394 Pfam U-box domain 1 61 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01181 Rops-Chr3 16715992 16717176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01181 1 384 U-box Gene Family AT2G35930 39.691 8.29e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01181 - - gmx:100811293 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00482 7 6053282 6054702 Rops3g01181 3 16715992 16717176 PCT