Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01179 ATGGCAACGTACTTTCATGGAAGCACTTCAGAAATTCAATCTTCTCCAGAAGGGTTGCAGACACTTTACCTTATGAACCCAAACTACGTACCTTACTCTGATGCGCCGCAACACCAAACTCCCAACATGCTCCTCGTCAATCCCAACACTACTGTTACTACTACCACTACTCACACCAACGCGCTCAACTTGGGTAGTTTCCTACACGCGCCTCCCCCTCCATCACCAAATAATCATCACCAAAATCAACAATACCTAACTGGTGTCACCATTCCCTCATCAAACATCCTCGGATCCAACACCTCCAACCAACAACGCTCCTTCCTCGGACACCACGAAATCTCAGGCTTCCATGGTTTTGCCACCACCGCCGCCGCCACAGCTCCTCGTGTCCACTATAACTTATGGGGTGCTGCTGCTGCTGCGGCGGCGGCGGCAACCATTCCCGCTAATAATTCAGGGTGTGCCACTGCAGCCGGAGATGTTTCACCGGAGGTTGGTTTTCATAGGCCTAATCATCAACAAGGTTTGTCACTTAGTCTTTCTTCACAACAAACGGCTTTTAGATCACTTTCCGGTGAGGTTGAGGCTGTATCTCCGGCGAGTCGTGGGGGTGATGATGTGAGGATTTCAGGTAATGGAATTTCGAGTATGCATGGTGTTGTTTTGGGGTCCAAGTATTTGAAAGCGGCACAGGAGCTTCTTGATGAAGTTGTGAATGTGGGTAAGGGAATCTTGAAAGGGGAATCTATGGAGGGGGCTAATAGGAATAATAATGGTAATAAAGAGAAGATGAAAGCGAATATTGAATCAACTTCTGGTGTTGGTGGTGATGGTGGAGGAGAAAATAGTGGAGTTGAGCTAAGCACCGCACAGAGACAAGAGCTTCAGATGAAGAAGACCAAGCTTGTTAGCATGCTTGATGAGGTGGAGCTAAGGTACCGACAGTATCACCAACAAATGCAACTTGTGATATCATCATTTGAGCAGGTAGCAGGATATGGGGCGGCAAAATCTTACACTGCTCTTGCTTTAAAGACTATCTCAAAGCAATTTAGGTGTCTTAAAGATGCAATCTCTTCACAAATTAAGACAACGAGCAAGATCTTGGGTGAAGATGATTGCTTAGGAGCCAAGGTAGAAGGTTCGAGGCTTAGGTATGTTGATCACCATCTTAGACAACAAAGGGCACTACAGCAGCTTGGAATGATCCAGCACAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAAAGAGCTGTTTCCATTCTTCGTGCTTGGCTCTTTGAGCATTTCTTGCACCCTTATCCTAAGGACTCCGACAAGGTTATGCTTGCAAAACAAACTGGACTTACTAGGAGCCAGGTGTCTAACTGGTTTATAAATGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAATCAAGGAGCAAGAGCAGAATAATGGCTCTCAGGATAACAACACAAATAGATCAAAAGAATCCAGCAAGGAGTTATGGTCAGCAACTAATGCCACACAGGAATCAGGTGCCACAAGACTCGATCAGATTAATGCTCTCCATTCAAAAGCAGAAAGCTTCAACAACCAAAACACTTCTCCAACTGAGATCTCAAATTCTAATTCAATGTCAACATCTCCCATGGGAGGAGGATCCTTTCAATCCCATTCTGGCTTCCATCTTGCAGGGCAAAGGAGTCCAAAACAACCAAGAAGTTCTGAAATTCAAAACTCCCCAGGTAGTATCCTTTCAGTGGACAAACCTGGAGAGACAAATAGAGAAGCCAACTACACAAAGTTTGACATTGAAAGGCACCACAAAGATGGCTACCCTTTAATGACTGGCAATGAAAACAACCATGGTGGGAGTTATGGAGCATTCTCAATGGTAGATATTGGAAGGTTTAATGTCACTGAACAATTGGCTCCCAGGTTCCATGGTAATGGTGTTTCTCTCACTCTTGGACTTCCCCACAATGAGAACCTTCCTCTCTCTGCAACCCAACATGGGTTTCTCTCACAGAATATACATCTTGGAGGGAGGCTTGAGATGGGAACCACTGAAAATGAGTTTTGTTCTATCAACACTCCACCTTCTTCTCATTCAGGCACCAGTTATGAAAGTATTGATATTCAAAACAGAAAGAGGTTTGCTGCTCAGTTATTGAGGAATTTTGTGGCCTAA 2196 0.4513 MATYFHGSTSEIQSSPEGLQTLYLMNPNYVPYSDAPQHQTPNMLLVNPNTTVTTTTTHTNALNLGSFLHAPPPPSPNNHHQNQQYLTGVTIPSSNILGSNTSNQQRSFLGHHEISGFHGFATTAAATAPRVHYNLWGAAAAAAAAATIPANNSGCATAAGDVSPEVGFHRPNHQQGLSLSLSSQQTAFRSLSGEVEAVSPASRGGDDVRISGNGISSMHGVVLGSKYLKAAQELLDEVVNVGKGILKGESMEGANRNNNGNKEKMKANIESTSGVGGDGGGENSGVELSTAQRQELQMKKTKLVSMLDEVELRYRQYHQQMQLVISSFEQVAGYGAAKSYTALALKTISKQFRCLKDAISSQIKTTSKILGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNNGSQDNNTNRSKESSKELWSATNATQESGATRLDQINALHSKAESFNNQNTSPTEISNSNSMSTSPMGGGSFQSHSGFHLAGQRSPKQPRSSEIQNSPGSILSVDKPGETNREANYTKFDIERHHKDGYPLMTGNENNHGGSYGAFSMVDIGRFNVTEQLAPRFHGNGVSLTLGLPHNENLPLSATQHGFLSQNIHLGGRLEMGTTENEFCSINTPPSSHSGTSYESIDIQNRKRFAAQLLRNFVA* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01179 731 SMART HOX_1 409 473 IPR001356 GO:0003677
Rops3g01179 731 ProSiteProfiles 'Homeobox' domain profile. 406 469 IPR001356 GO:0003677
Rops3g01179 731 MobiDBLite consensus disorder prediction 485 514 - -
Rops3g01179 731 FunFam BEL1-like homeodomain protein 9 412 474 - -
Rops3g01179 731 MobiDBLite consensus disorder prediction 528 589 - -
Rops3g01179 731 MobiDBLite consensus disorder prediction 528 595 - -
Rops3g01179 731 MobiDBLite consensus disorder prediction 481 514 - -
Rops3g01179 731 SUPERFAMILY Homeodomain-like 410 476 IPR009057 -
Rops3g01179 731 CDD homeodomain 409 470 IPR001356 GO:0003677
Rops3g01179 731 Pfam Homeobox KN domain 426 465 IPR008422 GO:0003677|GO:0006355
Rops3g01179 731 Pfam Associated with HOX 221 360 IPR006563 -
Rops3g01179 731 Coils Coil 293 313 - -
Rops3g01179 731 Gene3D - 412 492 - -
Rops3g01179 731 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 491 - -
Rops3g01179 731 SMART prehox3 216 361 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01179 Rops-Chr3 16694399 16699825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01179 1 731 Homeobox Transcription Factor Family AT2G35940 44.041 1.94e-143 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops3g01179 POX 5.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01179 - - gmx:100786883 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00485 7 6091158 6095989 Rops3g01179 3 16694399 16699825 PCT