Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01178 ATGGGGTTTTTGTTGAAAGAAGCTTTGAAGAGTCTGTGTGCAAGGAATCAGTGGTCTTATGCTGTGTTTTGGAAGATCGGTTACAACAATTCCAAGCTGTTAATCTGGGAAGAGTTCTACTACGAACCCTTGCCATCTTCTTTCCCTCCACGAATGGTTGGTACTTCTAATTTGCCTTACCAAGATGGGGAAGGATGCTGGTTTTCTTCAGAGTCTCACCTTGGGATTCAGGAGGACAGAGTCGGTTCATTGATCAACAAAATGATGGTGAATAATTCAGTCAACATCACTGGTGAAGGGATACTTGGACGGGCAGCATTTACAGGAAATCATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCATATCCACCAGAGGTGTGTAATGAGGTGCATCACCAATTTTCAGCTGGAATGAAGACAGTTGCAGTTATTCCTGTGCTTCCGCATGGGGTTGTTCAATTCGGTTCTTTCTTGCCAATAATGGAAAATACGGGATTTGTGAATGATGTCAAGAACTTGATCTTGCAATTGGGATATGTTCCCGGTGCCCTTCTATCTGAAGACTATTCAGCAAAACTCTCTAATGAAAGACTTGCTGGACCTGTGACTGATTGTGTGCATGTGTCTGTTGATCCATCGGTCATTACCTCAAACTGCACTCCCTCAGTAGTTAATGGTTCCAACCAACCAAGTAATTCATTTCATGCTGCAAGGCCTGTTGCTCAACCACCACATCTTCTAAGGGGAGAGATAAATAATTACCTGGGGCCTGTATTGTCACCTCAAACTCATAACTTAAACCAGATATTTGATAGCCTTTGCCAACCGAAGGCTCATTCAATGATTAAAACAAGTGTCAGAGGTCAACAAGAGAATACAGTTGTGAAGGCTGAAGCTCAAGTGATACCTGCAAATCCCGATTCATGTCTGCAACGGCATTCTGTTTCATATAATGCTAGATCTGCATTCAATGAATTAGCTGGTTCCGGTCAATCAAGTCTGAATGAATGCAGCCTTAAATATATGGAACAACAAATCTTATCAGGCATTGGGAGACAGAGTCATGTTAATCCTAATATGAATTCATCAAGTGCCCAAAATATGTCTCAACTGAAAATGAATGGAGGCCAAAGTTTTAATCAAAGTCAGAGTTCTAGTAGTACGTCACTTCTTGGAGGAATCCCAATATGTAGTGGGATGAGTAATCTTTCAAGGACAAATATGATTAATGGCTCGGTTTCAAACCCTTCTAAATTATCCACTGTTGATATTCCTGGATCACAAAAAGTTGGGTTTGGAATTCAAAATGATAATCCAACTTTGATTAATCAATATGCTGCCAATCACATGCATCTAGAAGGCTCTGCCCAGAAGAATCTACCCATTGATTTAAAGCATGCTCATGATGCTTTGGCTTCCACAGATCAAAGAATAGATGATGATCTGCTTCAGGCCCTTAAGATCCCATCTCTTCATCTTGAGGAGCATGTGCCTATGAGTGATCAAATCCCTGGTTTTCTTCATGATTGCCTCAATAAAGATGTTACTAGCCAACATATGATGAAAATGAATGCTAAACATGAAGATTGTACTCAACTCCCATCAGGTGATGACCTCTTTGATGTTTTAGGTGTGGATTTCAAAATGAAACTGCTGGATGGAAACTGGAATAAGTTGCTTGCCAATGAATCAAACACCAATGCAGAAAATCTTGATAAAAAGGAAACATGTATGAACTTGCCAGGCACTGACCATCTCTTAGATGCTGTGGTCTCAAAGGCTCAATCTGCTGCAAAACAGAACTCTGATGAAATGTCTTGCAGGACGACATTGACAAGGATTAGTACCACTTCTATTCCTTCTCCTGCCTGCAAGCAGGTTATGCTTGATAATGTTGTCCAGGGGGCATTGTTCGATTTTCCGAAGATGGGGGTTAAAACAGGTACCGTGGAAACAAGTTCTCTTAGGTCCGGATGTAGCAAGGATGATGCTGGAAACTCTTCTCAAACCACTTCCATATATGGCTCTCAACTTACTTCATGGGTTGAGAATGGTAGCAATGTGAAGCGCGAAAGTAGTGTTTCAACTGGATACTCTAAACGGCCAGATGAAGTTTGCAAAACAAATCGTAAAAGGCTTAAACCTGGAGAGAATCCCAGGCCTCGACCTAAAGATCGCCAGATGATTCAGGATCGTGTGAAAGAGTTACGAGAAATTGTGCCAAATGGAGGAAAGTGTAGCATAGATGCTCTTCTGGAAAGGACCATCAAGCACATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACTGGGGAATCTAAGATTGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTATGAGGGAGGGGCTACTTGGGCATATGAGGTTGGCTCACAATCAATGGTTTGCCCTATCATAGTTGAGGATCTTAATACTCCTCGGCAGATGCTAGTGGAGATGCTTTGTGAGGAAAAGGGTTTCTTTCTGGAAATAGCTGACTTAATCAGAGGACTAGGTTTAACCATCTTGAAGGGGGTCATGGAATCTCGGAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAATAGGGATGTAACAAGGATGGAAATATTCATGTCATTGGTTCGACTTTTGGAGCAAACGGTGAAGGGTGGTGGTACATCTTCATCCAATGCAATTGATAACAACATGATGGTTTATCAACATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGTAGGCCTAGTAGTTTGCAATGA 2793 0.4157 MGFLLKEALKSLCARNQWSYAVFWKIGYNNSKLLIWEEFYYEPLPSSFPPRMVGTSNLPYQDGEGCWFSSESHLGIQEDRVGSLINKMMVNNSVNITGEGILGRAAFTGNHQWILLNNFTRDAYPPEVCNEVHHQFSAGMKTVAVIPVLPHGVVQFGSFLPIMENTGFVNDVKNLILQLGYVPGALLSEDYSAKLSNERLAGPVTDCVHVSVDPSVITSNCTPSVVNGSNQPSNSFHAARPVAQPPHLLRGEINNYLGPVLSPQTHNLNQIFDSLCQPKAHSMIKTSVRGQQENTVVKAEAQVIPANPDSCLQRHSVSYNARSAFNELAGSGQSSLNECSLKYMEQQILSGIGRQSHVNPNMNSSSAQNMSQLKMNGGQSFNQSQSSSSTSLLGGIPICSGMSNLSRTNMINGSVSNPSKLSTVDIPGSQKVGFGIQNDNPTLINQYAANHMHLEGSAQKNLPIDLKHAHDALASTDQRIDDDLLQALKIPSLHLEEHVPMSDQIPGFLHDCLNKDVTSQHMMKMNAKHEDCTQLPSGDDLFDVLGVDFKMKLLDGNWNKLLANESNTNAENLDKKETCMNLPGTDHLLDAVVSKAQSAAKQNSDEMSCRTTLTRISTTSIPSPACKQVMLDNVVQGALFDFPKMGVKTGTVETSSLRSGCSKDDAGNSSQTTSIYGSQLTSWVENGSNVKRESSVSTGYSKRPDEVCKTNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGGKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNYEGGATWAYEVGSQSMVCPIIVEDLNTPRQMLVEMLCEEKGFFLEIADLIRGLGLTILKGVMESRNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGGGTSSSNAIDNNMMVYQHSFPQATQIPATGRPSSLQ* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01178 930 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 715 764 IPR011598 GO:0046983
Rops3g01178 930 MobiDBLite consensus disorder prediction 705 730 - -
Rops3g01178 930 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 175 IPR025610 -
Rops3g01178 930 CDD bHLH_AtLHW_like 719 788 - -
Rops3g01178 930 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 924 IPR043561 GO:0003700|GO:0006355
Rops3g01178 930 MobiDBLite consensus disorder prediction 691 730 - -
Rops3g01178 930 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01178 Rops-Chr3 16594058 16601203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01178 539 900 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 55.703 7.12e-120 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01178 - - gmx:100786351 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00488 7 6190056 6192072 Rops3g01178 3 16594058 16601203 PCT