Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01176 ATGGTAGCCATGGTAGTAGGTATTCAGATCAAAATTTGCATCTTTCTCTTCTTTATTACAATGGGTTATGGTGATACAGACCTAAATGATCTCAAAATTCTGAATGATTTCAGAAAAGGTTTGAAGAATCCAGAGCTTCTCAAATGGCCAGAGAATGGAAATGACCCTTGTGGCCCTCCTTCATGGCCTTTTGTGTTCTGTTCTGGAGGAAGAGTCACTCAGATTCAAGCTAAGAATCTTGGTCTTAAAGGATCATTGCCTCAAAACTTTAACCAGCTTTCAGAACTCCAAAATTTGGGTCTTCAACGCAATAATCTCAGTGGGATGTTGCCAACTTTCAGTGGATTATCCAAATTGCAATTTGCTTTTTTGGATTACAATGAGTTTGATGCAATCCCATCTGATTTCTTCAATGGACTCACCAGCATTAGGGTCTTGTCTTTGGAAGAAAACCCATTAAATGCTAGTACTGGATGGTCATTTCCTAAGGACTTGGAAAATTCAGTGCAATTAACCAATCTTTCCCTTGTGCATTGTAATTTGGTTGGACCATTGCCTGATTTTCTGGGCACATTACCTTCTCTCACAAATTTAAGGCTTTCAGACAACAGATTGTCTGGTGGTATTCCATCTAGTTTTGGTCAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAACAAGGTGGTGGGATGACAGGTCCTATTGATGTTATTGCTTCAATGACCTTCCTGAGACAGGTTTGGCTTCATGGAAACCAGTTCACTGGGACAATTCCTGAGAACATTGGAAATCTAGCTTCCTTGCAAGAGCTCAACCTCAATGGCAATCAACTTGTTGGCTTGATTCCAGATACCTTGGCAAATATGGACCTTGAGATTCTGGTGTTAAATAATAACAGGTTCATGGGTCCAATACCAAAGTTTAAGGCTGCAAAAGTATCTTATGATTCCAATTTGTTTTGTCAACCTAAGCCTGGGCTTGAATGTGCCCCGCAAGTTACTCCTCTACTGGATTTTCTCCATGATCTGAATTACCCTTCACGTCTCACTTCTAAATGGTCTGGTAATGAACCATGTGGAGAGCCATGGTTTGGACTGAGCTGCAGTCACAACTCAGAGGTATCTATAATCAATTTGCCTAGACAAAAGCTTAATGGTACACTGAGTCCCTCACTTGCAAAGTTAGATTCACTCCTTGAAATCAGGCTTGCAGGAAATAATATAATTGGCAAAGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGGTTGTTGGATTTAGGAGATAACAATGTTGAGCCTCCATTGCCAAAGTTTCATGATGGTGTGAAAGTTATCATTGAGGGTAACCCTCTTCTTGGTAATCAAACTGGAAGGAGTCCAATTCCTATTAGCAGCCCTCCACCTTCAAGTGCACAGCCTTCACCACCCAACCTGTCACCACCACCATCATCCTCACATATGCCACCTTCCTCTGGTCAGAGTTCAAGCTCAAATCATTCTAGGTCTGTCCAAATAAAGTCCCAACCAAATAACTTCAAAAGATTCAAAACACTAGTGATAGTGGCTGGTGTTGCAATCTTTGCATTTGTAGCTCTTTTAGTTATTTCTCTCTTTATATGCTGTATGAAGAAGAAGAAATCCTCCTTTGATGCTACTAACTCTGTAGTGGTTCACACTAAAGATGCATCTGATCCAGAAAAGATGGTTAAATTTTCAGTTACAGATAGCACCATTGGAAGCTTATCAACAAAGACAGGGATAAGTTCTCTGACTAACATCAGTAGTGAAACTGAAGGCTCTCATGTAATTGAGGATGGCAACCTTACCATTTCTGTTCAAGTTCTACGTAAGGTCACCAAGAATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACAGTTTACAAGGGTGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGTATGGAGCTATTAGTAGTAAAGCAATGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTTAGGCACAGACATTTGGTATCCCTTCTAGGCTATTCCATTGAAGGCGATGAAAGACTTTTGGTTTATGAATATATGCCTCTTGGTGCTCTAAGCAGACACCTTTTTCATTGGAAAAGCTTGAAATTGAAGCCTTTGTCTTGGTCACAAAGGCTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCATGGTCTTGCCCGCCAGACCTTCATCCATAGAGACCTCAAGTCTTCAAATATTCTTCTGGGGGATGATTTTAGGGCAAAAGTTTCTGATTTTGGTTTGGTGAAACTTGCCCCAGATGGTGAAAACTCAGTGGCAACAAGGCTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAGGTTGATGTGTTCAGCTATGGTGTGGTGTTGATGGAACTTGTGACTGGATTAATGGCTCTTGATGAGAGCCGACCGGAGGAAAACCGGTACTTGGCTGAATGGTTTTGGCAAATCAAATCGAGCAAAGACAAGCTTATGGCTGCCATTGATCCAGCTCTTGAAGCAAGTGAAGAGACTTTTGAAAGTATTTCCATTGTAGCTGAACTTGCTGGACATTGCACTGCTAGGGAAGCACACCATAGGCCGGATATGGGCCATGCAGTAAATGTGCTGTCAGCTTTGGTAGAGAAATGGCGACCAGTTGATGAAGAATTTGATTTTAGCTCTGGCATTGACTACAGTCAACCACTTTCCCAAATGTTGAAAATTTGGAAGGAAACAGAAAGCAAAGAACTCAGCTATACAAGTCTTGAAGACAGTAAAGGAAGCATACCAGCTAAACCTACTGGTTTTGCAGACTCCTTTACTTCTGCTGATGCTCGATGA 2910 0.4124 MVAMVVGIQIKICIFLFFITMGYGDTDLNDLKILNDFRKGLKNPELLKWPENGNDPCGPPSWPFVFCSGGRVTQIQAKNLGLKGSLPQNFNQLSELQNLGLQRNNLSGMLPTFSGLSKLQFAFLDYNEFDAIPSDFFNGLTSIRVLSLEENPLNASTGWSFPKDLENSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSDNRLSGGIPSSFGQSSIQVLWLNDQQGGGMTGPIDVIASMTFLRQVWLHGNQFTGTIPENIGNLASLQELNLNGNQLVGLIPDTLANMDLEILVLNNNRFMGPIPKFKAAKVSYDSNLFCQPKPGLECAPQVTPLLDFLHDLNYPSRLTSKWSGNEPCGEPWFGLSCSHNSEVSIINLPRQKLNGTLSPSLAKLDSLLEIRLAGNNIIGKVPSNFTELKSLRLLDLGDNNVEPPLPKFHDGVKVIIEGNPLLGNQTGRSPIPISSPPPSSAQPSPPNLSPPPSSSHMPPSSGQSSSSNHSRSVQIKSQPNNFKRFKTLVIVAGVAIFAFVALLVISLFICCMKKKKSSFDATNSVVVHTKDASDPEKMVKFSVTDSTIGSLSTKTGISSLTNISSETEGSHVIEDGNLTISVQVLRKVTKNFASENELGRGGFGTVYKGELEDGTKIAVKRMEYGAISSKAMEEFQAEIAVLSKVRHRHLVSLLGYSIEGDERLLVYEYMPLGALSRHLFHWKSLKLKPLSWSQRLAIALDVARGMEYLHGLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGENSVATRLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELVTGLMALDESRPEENRYLAEWFWQIKSSKDKLMAAIDPALEASEETFESISIVAELAGHCTAREAHHRPDMGHAVNVLSALVEKWRPVDEEFDFSSGIDYSQPLSQMLKIWKETESKELSYTSLEDSKGSIPAKPTGFADSFTSADAR* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01176 969 Gene3D Ribonuclease Inhibitor 28 326 IPR032675 -
Rops3g01176 969 ProSiteProfiles Protein kinase domain profile. 623 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01176 969 Gene3D Ribonuclease Inhibitor 331 457 IPR032675 -
Rops3g01176 969 SMART LRR_typ_2 93 115 IPR003591 -
Rops3g01176 969 SMART LRR_typ_2 116 139 IPR003591 -
Rops3g01176 969 SMART LRR_typ_2 192 216 IPR003591 -
Rops3g01176 969 SMART LRR_typ_2 140 163 IPR003591 -
Rops3g01176 969 SMART LRR_typ_2 265 288 IPR003591 -
Rops3g01176 969 MobiDBLite consensus disorder prediction 457 506 - -
Rops3g01176 969 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Rops3g01176 969 SUPERFAMILY Protein kinase-like (PK-like) 603 899 IPR011009 -
Rops3g01176 969 FunFam Receptor-like kinase TMK4 28 326 - -
Rops3g01176 969 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Rops3g01176 969 Pfam Leucine rich repeat N-terminal domain 332 369 IPR013210 -
Rops3g01176 969 SMART serkin_6 623 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01176 969 MobiDBLite consensus disorder prediction 489 506 - -
Rops3g01176 969 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Rops3g01176 969 FunFam receptor protein kinase TMK1 585 700 - -
Rops3g01176 969 CDD STKc_IRAK 629 899 - -
Rops3g01176 969 SUPERFAMILY L domain-like 33 436 - -
Rops3g01176 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Rops3g01176 969 Gene3D Phosphorylase Kinase; domain 1 585 700 - -
Rops3g01176 969 MobiDBLite consensus disorder prediction 945 969 - -
Rops3g01176 969 PANTHER OSJNBA0070M12.3 PROTEIN 13 969 - -
Rops3g01176 969 FunFam receptor protein kinase TMK1 701 918 - -
Rops3g01176 969 Gene3D Transferase(Phosphotransferase) domain 1 701 916 - -
Rops3g01176 969 MobiDBLite consensus disorder prediction 462 488 - -
Rops3g01176 969 Pfam Protein tyrosine and serine/threonine kinase 626 896 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01176 Rops-Chr3 16543420 16547589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01176 84 900 Receptor kinase-like Gene Family AT1G75820 29.988 3.02e-79 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops3g01176 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01176 - - gmx:100815045 1511.51