Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01172 ATGGAGTCTCGTATGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCTTTTGGAGCTGCTATTCTTGTTAATCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGACTTGCAAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGCTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCTTATGGTGCTTACTTTCCTGAAGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGAATACCTGCATTCAAATTATGTTTTACATCGTGACCTAAAGTGTTCCAACATATTTCTTACCAAGGATCAGGATGTTCGTCTGGGAGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATCTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCCGAACTGCTTGCAGATATTCCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCTATTGGTCCTTTGCCTCCATGTTATTCCCCTGCCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACTCTTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAGTCCTCCAACAGCATGTTCTCCTGAAAAACCAATTTCTGCTGTCAATGATTCTCAAAAAAATATGGCTGAAAGTCAAAGCAGCAATGGATCAAGTAGTGACAAAGATATTTTGATGTCAAATGGGAGAAACATTGCAACAGCAGTGCCAAAGTGTGATAACAAAGCCACTGAGACAGATGTTGTATCAATTGATGATGATGGCTCAGAGCATCTCCTGCTTAGTGAGGAAGAAAATGGCTCTAGTAATGCCAATGCCAAATTAGCTGAGCGAGAGGTGATGAAACCATCTCATAATGAACTGTGTTCCAACATTGAATCTAAGCAGCCAAAAACAATCAGGAACATAATGATGGCATTGAAAGAGGGAAAAAAGAGAGAAGCAAGTTCTCCAATGAGAGGCAGTCGTGTAAAGGCGGGTGGTGTATCAACACCGAAAATAAATACAGAGACATTGTCTAAATTGCCTAAACCAACTTTTATTGCTCCTGGTTTGAAGCCTAGTATAGAGTCACCAAATGTTGCACTTGCAAAGGCAACTCCTGATTCTGCAAAAAGAGTACAGGGATCACATCAGTCAAAGCATCAGTTACTGATGACAGAATCCTCACCAAAAGTTATACCTAGACATGATTTGACTCCACCATCTGGTCTTATCAAACAAGTAGAAGGAGATGGAGTTCCTCCCAAGCCAAGGCAGATGACTCCCCCAAGCTTACTACGAAGACCTTTATTTTCAGGAAGAATGAAGCTGGCTGGGTTTGATGTTCCAAATGCAGCAAATGATAGTGGGAAGCTAGGTCCAAGTAAAATTTCCCAGGAGCCTGAGATGAGCCATTGTCATTTGATCAATGGCAATGTACCACATATTTCTAGACAGGTTAATAGAGAACCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGTAATTCTGCCTCGTCTTCGGTTTCTATGCAAGGATGTGAACTTGCTGATGATGCAACAACTTTCATTGACATGAGAGAACAGATGCTTCCTGATCATGAGAGAGTAACCCACATTATAGGTATGGAATCATGTCCAGGCAGTAGTAGCCCACCTACAACCTGTTCACGGTGTAAGATGGCAGAGAAAGGGTCTGAGGAAACCTGTGAAGTCAACCTGAATTTTCAGAATACTATTAGTAGTAATGACAAATTGAGTTCCAGTTTAGCTCTGGATCACACTGTTGAAGATTCTAAGGTAATGTTTGCTTCAGAAGATAGTCTTCCCATAAATCAGACAACTATATCTGCTGCCTCTGGGTGTGATAATAGATCTGTAGACCCCCCTGCTGAAGCCACCAAAGAAATCAAAGATCTTCAAGATATTTCTAAGGAAATGGCTTTAACCAAGTATATCAAACATCCATCTCCAATTTCTGGAGAAGAGTTTGTTTGTGAAGAAGTTGGTTCTGTAAGCAAACTCGATAATAGGCCTGATATAGTTAGCCAGCCAAAACTTGCAAGTATGTCCACTGGTGATGACAAATTCACAGTGAGGGAGAGACTGTCATCAGTGACTGAAACTGTTCCTCTGATTACTACTACTAAAATAGCAAACCAGAAAGTTTTGCAAGAGAAAGGAACTGTCTTGCAGAATCCAGCACCAGAAAGGTCAGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTTATACGCCATAGTAGTTACCGTGTTGGAAGTGAGCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCCAAATGTAGATGTTGGTAAGTTTCTCAATGTTGTGAGGGATGATTTAGAAATGAGAAACATAAGCTCTCCTTTGACCACCCTTAAATCTTCAAGTTGCCCAGAAGCTGCAAACTTGAAGTCAAATATTTCTGATCAGTTGGAAATGAGAAACATGAGCACCCCTCCTACCCTTAAATCTTCAAGTTCCTCTGATGATGCTTTGAGCTTGAAATCAGGCATTTCTGATCATCCTGGTTTTAAGGAACAAGATGTGAGTAACCCTGTTTCTTTAGTTTCAGAATCTGATTCCACTGAGCTCAATAAATGTAACACTCCTACAACTGAAGACAAACCACCAGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAAGCACTTGAAGAGCTCTTGGAATTGTCTGCAGAGTTGCTGCAGCAAAATAGGTTGGAGGAACTTCAAGTTGTTCTAAAGCCCTTTGGCAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTTAAAGGAATGATGTTTGAGGAAAGTGGAGGACGCTGTTCATGA 3147 0.4156 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSYGAYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPALKTLIKGMLRKNPEHRPTASEVLKHSYLQPYVDQYRPSFSPPTACSPEKPISAVNDSQKNMAESQSSNGSSSDKDILMSNGRNIATAVPKCDNKATETDVVSIDDDGSEHLLLSEEENGSSNANAKLAEREVMKPSHNELCSNIESKQPKTIRNIMMALKEGKKREASSPMRGSRVKAGGVSTPKINTETLSKLPKPTFIAPGLKPSIESPNVALAKATPDSAKRVQGSHQSKHQLLMTESSPKVIPRHDLTPPSGLIKQVEGDGVPPKPRQMTPPSLLRRPLFSGRMKLAGFDVPNAANDSGKLGPSKISQEPEMSHCHLINGNVPHISRQVNREPQKAFERSSKGMQTDSSNSASSSVSMQGCELADDATTFIDMREQMLPDHERVTHIIGMESCPGSSSPPTTCSRCKMAEKGSEETCEVNLNFQNTISSNDKLSSSLALDHTVEDSKVMFASEDSLPINQTTISAASGCDNRSVDPPAEATKEIKDLQDISKEMALTKYIKHPSPISGEEFVCEEVGSVSKLDNRPDIVSQPKLASMSTGDDKFTVRERLSSVTETVPLITTTKIANQKVLQEKGTVLQNPAPERSDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVPNVDVGKFLNVVRDDLEMRNISSPLTTLKSSSCPEAANLKSNISDQLEMRNMSTPPTLKSSSSSDDALSLKSGISDHPGFKEQDVSNPVSLVSESDSTELNKCNTPTTEDKPPAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMFEESGGRCS* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01172 1048 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01172 1048 MobiDBLite consensus disorder prediction 291 311 - -
Rops3g01172 1048 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
Rops3g01172 1048 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Rops3g01172 1048 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 569 597 - -
Rops3g01172 1048 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 910 975 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 473 512 - -
Rops3g01172 1048 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01172 1048 MobiDBLite consensus disorder prediction 947 972 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 577 597 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 396 423 - -
Rops3g01172 1048 MobiDBLite consensus disorder prediction 910 931 - -
Rops3g01172 1048 CDD STKc_Nek 7 262 - -
Rops3g01172 1048 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g01172 1048 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 996 - -
Rops3g01172 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Rops3g01172 1048 Gene3D Transferase(Phosphotransferase) domain 1 90 330 - -
Rops3g01172 1048 Coils Coil 985 1011 - -
Rops3g01172 1048 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01172 Rops-Chr3 16489782 16496886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01172 14 263 MAP Kinase Kinase Kinase AT1G53570 32.157 5.40e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops3g01172 Pkinase 9.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01172 K08857 - gmx:100784761 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00507 7 6548369 6555729 Rops3g01172 3 16489782 16496886 PCT