Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01168 ATGTCGGGCAAGCGAGCTCCTCCGTCCACAGCCGCCGCGCCTTCAAACCCGCCGGAGCAGGTCATGCAGTCGATGAAACGACACCTACCGTTCTCCGCCATGAAACCACCCTTCGTAGCTGCCGGAGATTACCATCGCTTCGCCCCTGACAACCGCCGGAGTCTCGACCAAGACGCCGAAGCCATCATCGTTAAGACTCCTCAATTGAAGCGGAAGACTGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGAATGCTGGATCCACTGATGCAGCTAATAGTCCCTTTCAGACACCTGTATCAGGAAAGATGGGGAAGGGAGGCAAATCTAGGCTGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGCAATAATCTCACTCCTGCGGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACGAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAGCTGAAGAACAGAATTCAATGGAAGGGACTGGATGTATCGAGACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGACAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATTAGGGAGATGCAAGAAAGACTACGGGATCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAATTTGCCATGCTTCCAGAATGAAACCTTGATAGCCATTAAAGCCCCACATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGATGTTGCACCCAAATTTCCATCCAGTCCAGAATTTAACAAACATCAATCAACTGTGGTCCCAGACGATAGAGGGAAGGACATAGAAGTTCAGGGACAAGATGGTCAGGGGCCAAGTTCAGATTTTACTACCTCTCAGGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCAGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACGGAACCTGGAGTTGAATGGAATGAACTGGAGACACTTCAAGAAGATTATTGTGTGACTCGTGAGCACACTACAACAACCCCAAGTCATCCTTCGAACGTGGGTGAAGTGTCTTCTGCATCTAACCCTACTGGAGGTTGA 1395 0.4559 MSGKRAPPSTAAAPSNPPEQVMQSMKRHLPFSAMKPPFVAAGDYHRFAPDNRRSLDQDAEAIIVKTPQLKRKTEAADFEADSGDRMNAGSTDAANSPFQTPVSGKMGKGGKSRLTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQTEVENLTMEERRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPEFNKHQSTVVPDDRGKDIEVQGQDGQGPSSDFTTSQDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELETLQEDYCVTREHTTTTPSHPSNVGEVSSASNPTGG* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01168 464 MobiDBLite consensus disorder prediction 71 140 - -
Rops3g01168 464 MobiDBLite consensus disorder prediction 440 464 - -
Rops3g01168 464 Gene3D - 138 211 IPR036388 -
Rops3g01168 464 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Rops3g01168 464 CDD E2F_DD 220 326 IPR032198 GO:0046983
Rops3g01168 464 MobiDBLite consensus disorder prediction 115 140 - -
Rops3g01168 464 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Rops3g01168 464 Coils Coil 222 263 - -
Rops3g01168 464 Coils Coil 160 180 - -
Rops3g01168 464 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Rops3g01168 464 PANTHER TRANSCRIPTION FACTOR E2F 90 423 IPR015633 GO:0000978|GO:0006357
Rops3g01168 464 MobiDBLite consensus disorder prediction 342 381 - -
Rops3g01168 464 FunFam E2F transcription factor 1 138 211 - -
Rops3g01168 464 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g01168 464 Gene3D - 216 326 - -
Rops3g01168 464 SUPERFAMILY E2F-DP heterodimerization region 223 326 IPR037241 -
Rops3g01168 464 MobiDBLite consensus disorder prediction 88 102 - -
Rops3g01168 464 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01168 Rops-Chr3 16424663 16430239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01168 18 463 E2F-DP Transcription Factor Family AT5G22220 56.118 3.50e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops3g01168 E2F_CC-MB 5.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01168 K06620 - gmx:100819817 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01168 3 16424663 16430239 Rops3g01168 3 16424663 16430239 ECH