Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01166 ATGTCTTCCAACAAGAAAAATATTCTTAAAACAGTATTCACAGCAAATGGAAGCTGTGGTTGTGACAAAAGAAAGGCCATTGAAGTGCATGAACCAACCCCAATACGCAAAATCTCCATTCATCAAAAGAGAAACCCAAGTAGCAAGGCTTCCCCTACCACCACTTCAAATGATGCCCTCTCCATAGATGATGATGATGATTTTTCCTCCACCACCATTTCCATTACTCATGACCATAACAAAAGCCCCATAAACAACTATGCACCTTCTTCCAAACAAAGCCCACTCTTGAATAGTGTTGCCATTGAGAAGAACTCTGAAGACCCATATCATGATTTCAAGCTCTCCATGCTTCAAATGATCTTTGAGAAGGAGATTGATTCAGAAGAAGATCTTCAAGAACTTCTCCAATGCTTTCTTCACCTCAATGACATGTGTCATCACCATGTCATCCTTAAAGCTTTCAATGAGATCTGCAAAGAGGCTTTCCCTGACAAGGTGAGTGCTACTACTGCTACTACTACCACTCCTTCTCGCAGGAACCACCTCGTTCTTCGGAAGGGTCAGTGA 570 0.4193 MSSNKKNILKTVFTANGSCGCDKRKAIEVHEPTPIRKISIHQKRNPSSKASPTTTSNDALSIDDDDDFSSTTISITHDHNKSPINNYAPSSKQSPLLNSVAIEKNSEDPYHDFKLSMLQMIFEKEIDSEEDLQELLQCFLHLNDMCHHHVILKAFNEICKEAFPDKVSATTATTTTPSRRNHLVLRKGQ* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01166 189 ProSiteProfiles OVATE domain profile. 102 161 IPR006458 -
Rops3g01166 189 MobiDBLite consensus disorder prediction 170 189 - -
Rops3g01166 189 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 44 162 IPR038933 GO:0045892
Rops3g01166 189 MobiDBLite consensus disorder prediction 73 92 - -
Rops3g01166 189 NCBIfam uncharacterized plant-specific domain TIGR01568 100 159 IPR006458 -
Rops3g01166 189 MobiDBLite consensus disorder prediction 32 63 - -
Rops3g01166 189 Pfam Transcriptional repressor, ovate 106 161 IPR006458 -
Rops3g01166 189 MobiDBLite consensus disorder prediction 40 59 - -
Rops3g01166 189 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01166 Rops-Chr3 16411991 16412560 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Rops3g01166 Ovate 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01166 - - gmx:102660065 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00515 7 6642378 6643293 Rops3g01166 3 16411991 16412560 PCT