Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01154 ATGGGAGATGCTAAGAAGGATCATGCTTGGTGGGAGGTGCATGAGGACTTCTTCACATCTTATGGTGAGGTCTATGATAGCTTTGGTGCCATGAACTTGCGAGGGGGTCTGGAGTATTACTCCCATGGTACCATAGAGTTTCTCTTGGTCTCATATTCCAAGCTGTCTCAAGATCAGAACAAGATGAAGCCAACAAGGGTCATAAAGAATGAAGATCTTGAAGAGTTGAAGGAACCGGGTACCCTCCGTCACGCCGTGATCCAAGATGAACCATTATGGATCATCTTTGCAAGAGACATGGTGATCAAGTTAAAGGAAGAACTCACAATGAACTCTTTCAAAACTATTGATGGAAGAGGTGCAAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATACGTTACCAATGTTATAATCCATGGTTTACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGACACTATGGGTGGAGAACCGTATCGGATGGTGATGTGATTCCTATACCAAAGACAAGAACATGCATCCGTGTTCACATAGCTGATACCAAAGCTCCAAGAGGTACTGTTATCTGCATGTTTTTGTATAAGGAAAGTAGCAAAATTTCCGAGGGAGGCAAGCGTGGGGGTGTGCATCATGCACCACGACGGAAAGTAGAAAAGGAGCTCGCATTGCTCAATCCGCTTCATTTCAATGAATTTAGGGATCGTAAGTTATATACGGTTTTGGTAGGGAATTTGCCGGAGGACCATTCAAAGAAGAACATTCAGCAAATATTCCATGAAGCTGGAAACATAAGGAGGATAACCATTCGTGACCCGCATTCTACGGTAGAGTCCGCAAAGCATGTCAAGCAAGAAAAGTTGATAAGTAGTAAGTTACATGCTCTGGTGGAATACGAAACTATTGAGGCTGCTGAGAAGGCAGTGGCTATGTTAAATGATGAACAAGATTGGAGAAAGATCATGCGGGTTAAACTTCTCAGGCATTCGGGTAAGGAGCTTGAGAAGGTGCCCAGGTTTTCAAAGAAGGGTGCTGCAGTTTACGTTGGCAAATAA 1083 0.4377 MGDAKKDHAWWEVHEDFFTSYGEVYDSFGAMNLRGGLEYYSHGTIEFLLVSYSKLSQDQNKMKPTRVIKNEDLEELKEPGTLRHAVIQDEPLWIIFARDMVIKLKEELTMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGLHIHDCKQGGNAMVRDSPRHYGWRTVSDGDVIPIPKTRTCIRVHIADTKAPRGTVICMFLYKESSKISEGGKRGGVHHAPRRKVEKELALLNPLHFNEFRDRKLYTVLVGNLPEDHSKKNIQQIFHEAGNIRRITIRDPHSTVESAKHVKQEKLISSKLHALVEYETIEAAEKAVAMLNDEQDWRKIMRVKLLRHSGKELEKVPRFSKKGAAVYVGK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01154 360 SUPERFAMILY RNA-binding domain, RBD 248 341 IPR035979 GO:0003676
Rops3g01154 360 Gene3D - 240 342 IPR012677 -
Rops3g01154 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 338 IPR000504 GO:0003723
Rops3g01154 360 SUPERFAMILY Pectin lyase-like 77 176 IPR011050 -
Rops3g01154 360 SMART rrm1_1 249 334 IPR000504 GO:0003723
Rops3g01154 360 SMART amb_all 99 271 IPR002022 -
Rops3g01154 360 PANTHER PECTATE LYASE 18-RELATED 69 180 IPR045032 GO:0030570
Rops3g01154 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 323 IPR000504 GO:0003723
Rops3g01154 360 Gene3D - 57 198 IPR012334 -
Rops3g01154 360 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Rops3g01154 360 PRINTS Pollen allergen Amb family signature 71 96 IPR018082 -
Rops3g01154 360 CDD RRM_La_like_plant 249 336 IPR034878 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01154 Rops-Chr3 16144362 16146316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01154 79 177 Polysaccharide Lyase AT5G63180 84.848 1.81e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01154 K01728 - gmx:100814679 199.519