Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01153 ATGCTTCGTCTTCTGGTCTTGCAATCTGCACGCCGGGGAAACGAGGATTTTAAAATGACACCCTCACCACATGTTCACAGTGGGTATTCATTTCCCATGACTGTTGAAGTCAGGAATGATGGTAAACAGAATATCCCTGTATTTGTGGTCAATACTTCGTTGAATTTGAAATTGAATTCTATCATGTTCGAGGTGGAAGGTGCTGGGTCATGGACATTTGGCTTATACCATCCAAGCGATAGGCCATCTGAAGCAAGGATCAGTTCTGGGTGGAAATCCTTTTGTGTTGAGCAAAATTTAAAGGCAGGAGACAAACTTTGCATACAACTTTGGCTCAACGTGGTGCATGCAACAAGGGAGGCAGCCTCATATGCATTTGGCTCTGCCTTGGAAAGGCCTTCCCCAAACCATCCAGGCACCATTTACGTTCAAATGGGAGATGCTAAGAAGGATCATGCTTGGTGGGAGGTGCATGAGGACTTCTTCACATCTTATGGTGAGGTCTATGATAGCTTTGGTGCCATGAACTTGCGAGGGGGTCTGGAGTATTACTCCCATGGTGAGGAGCCAGAGCTGTTGAATGGAAGCAACAACAAGGTCTCAGAAAAGGTCATAAAGAATGAAGATCTTGAAGAGTTGAAGGAACCGGGTACCCTCCGTCACGCCGTGATCCAAGATGAACCATTATGGATCATCTTTGCAAGAGACATGGTGATCAAGTTAAAGGAAGAACTCACAATGAACTCTTTCAAAACTATTGATGGAAGAGGTGCAAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATACGTTACCAATGTTATAATCCATGGTTTACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGACACTATGGGTGGAGAACCGTATCGGATGGTGATGTGATTCCTATACCAAAGACAAGAACATGCATCCGTGTTCACATAGCTGATACCAAAGCTCCAAGAGGTACTGTTATCTGCATGTTTTTGTATAAGGAAAGTAGCAAAATTTCCGAGGGAGGCAAGCGTGGGGGTGTGCATCATGCACCACGACGGAAAGTAGAAAAGGAGCTCGCATTGCTCAATCCGCTTCATTTCAATGAATTTAGGGATCGTAAGTTATATACGGTTTTGGTAGGGAATTTGCCGGAGGACCATTCAAAGAAGAACATTCAGCAAATATTCCATGAAGCTGGAAACATAAGGAGGATAACCATTCGTGACCCGCATTCTACGGTAGAGTCCGTAAAGCATGTCAAGCAAGAAAAGTTGATAAGTAGTAAGTTACATGCTCTGGTGGAATACGAAACTATTGAGGCTGCTGAGAAGGCAGTGGCTATGTTAAATGATGAACAAGATTGGAGAAAGATCATGCGGGTTAAACTTCTCAGGCATTCGGGTAAGGAGCTTGAGAAGGTGCCCAGGTTTTCAAAGAAGGGTGCTGCAGTTTACGTTGGCAAATAA 1494 0.4424 MLRLLVLQSARRGNEDFKMTPSPHVHSGYSFPMTVEVRNDGKQNIPVFVVNTSLNLKLNSIMFEVEGAGSWTFGLYHPSDRPSEARISSGWKSFCVEQNLKAGDKLCIQLWLNVVHATREAASYAFGSALERPSPNHPGTIYVQMGDAKKDHAWWEVHEDFFTSYGEVYDSFGAMNLRGGLEYYSHGEEPELLNGSNNKVSEKVIKNEDLEELKEPGTLRHAVIQDEPLWIIFARDMVIKLKEELTMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGLHIHDCKQGGNAMVRDSPRHYGWRTVSDGDVIPIPKTRTCIRVHIADTKAPRGTVICMFLYKESSKISEGGKRGGVHHAPRRKVEKELALLNPLHFNEFRDRKLYTVLVGNLPEDHSKKNIQQIFHEAGNIRRITIRDPHSTVESVKHVKQEKLISSKLHALVEYETIEAAEKAVAMLNDEQDWRKIMRVKLLRHSGKELEKVPRFSKKGAAVYVGK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01153 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 475 IPR000504 GO:0003723
Rops3g01153 497 ProSiteProfiles B3 DNA-binding domain profile. 28 132 IPR003340 GO:0003677
Rops3g01153 497 SMART rrm1_1 386 471 IPR000504 GO:0003723
Rops3g01153 497 Gene3D - 16 120 IPR015300 -
Rops3g01153 497 PRINTS Pollen allergen Amb family signature 208 233 IPR018082 -
Rops3g01153 497 PRINTS Pollen allergen Amb family signature 244 260 IPR018082 -
Rops3g01153 497 SUPERFAMILY RNA-binding domain, RBD 385 478 IPR035979 GO:0003676
Rops3g01153 497 Gene3D - 377 479 IPR012677 -
Rops3g01153 497 Gene3D - 194 335 IPR012334 -
Rops3g01153 497 SUPERFAMILY DNA-binding pseudobarrel domain 39 110 IPR015300 -
Rops3g01153 497 SUPERFAMILY Pectin lyase-like 214 313 IPR011050 -
Rops3g01153 497 PANTHER PECTATE LYASE 18-RELATED 209 317 IPR045032 GO:0030570
Rops3g01153 497 SMART amb_all 236 408 IPR002022 -
Rops3g01153 497 CDD B3_DNA 37 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01153 Rops-Chr3 16115585 16126002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01153 216 314 Polysaccharide Lyase AT5G63180 84.848 6.46e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01153 K01728 - gmx:100101868 200.675