Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01147 ATGGAAGATCTCCCACCTGGTTTTCGCTTCTTCCCAACAGAAGAAGAGTTAGTTAGCTTTTACCTACACAACAAGCTAGAAGGGAAAAGAAGTGCCATAGATAGAGTCATCCCAGTTATTGACATTAATGGTGTAGAGCCATGGAACCTTCCAACACTTGCAGGGGAGCGTTGTCGTGGGGATAAAGAGCAATGGTTTTTCTTTTCACCTGGTCAAGACAGAGAATTCAGGGGAGGTAGACCCAACAGGACCACAGCTAGTGGGTATTGGAAGGCAACAGGTTCACCTGGCTATGTTTACTCTTCTGATAACAAAGTCATTGGAGTGAAGAAAACCATGGTTTTCTACAAAGGGAAAGCTCCTACCGGAAGGAAAACCAAATGGAAGATGAATGAGTACAAATACATCCAAGTATCTAATCAATCTACCACTAGCATCCCTCAGTTAAGGAAGGAATTCAGCTTGTGCAGAGTCTATGTCATATCAGGAAGCTTTAGAGCATTTGATCGACGCCCATTAGAGAAAGAAAGAGTAGCGTCACGGCTTCATGAAACTGATGACAGATTTGCAGCCACATGTTCTCAACAGGCTTCGAAAAGGGATGGTTCAAGTTCATCTGAAACTTCCCACTTAGGAGGAATCCATGATATTACTCATCATCTGCCAGAGGTTGGAGGCCCAAGTAACACTAATTGGAATGTAAATAATAATGATAATGAGGTTCAACTCCAAGAACCACTATGGGATTTGGAATGGGAACAATTTAATTGGCTTTAA 777 0.4234 MEDLPPGFRFFPTEEELVSFYLHNKLEGKRSAIDRVIPVIDINGVEPWNLPTLAGERCRGDKEQWFFFSPGQDREFRGGRPNRTTASGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPTGRKTKWKMNEYKYIQVSNQSTTSIPQLRKEFSLCRVYVISGSFRAFDRRPLEKERVASRLHETDDRFAATCSQQASKRDGSSSSETSHLGGIHDITHHLPEVGGPSNTNWNVNNNDNEVQLQEPLWDLEWEQFNWL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01147 258 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Rops3g01147 258 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Rops3g01147 258 MobiDBLite consensus disorder prediction 191 237 - -
Rops3g01147 258 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 194 - -
Rops3g01147 258 MobiDBLite consensus disorder prediction 191 212 - -
Rops3g01147 258 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Rops3g01147 258 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01147 Rops-Chr3 16074376 16075874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01147 2 257 NAC Transcription Factor Family AT3G44350 54.086 4.50e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops3g01147 NAM 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01147 - - gmx:100781321 370.548