Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01145 ATGTGTTGCAAGTCTCATGGTGGTAGGAAGTGTTGTTCATTCGCGGGTTGCACCAAGAGTGCACGTGGTGGTGCTGATAGTTGTGTTCAGCATGATGGGGGGAGTCCGAAGGCTTGCTCGAGGTTGCGCTACCTGTTTCGGAGGCTTGTCAAGCAACACCACTGGGTCGAAGGTAGTGGGGTTCTCAGTGCTTACATGAAGGGAACCCTTAATGATACTTCTCCCTTCAGGAATCGTTTTAAGTGTTGGGTTTTACTGGAGCTTCTTAAACATGTGAAAAACCATTCTAGTAATCCAACAAGGATCAAGAATCTCTATGATATTTGGTCAAAGAAGATTAGATCTATGAAGGGTTGGCCATTAGAGAGCAGATATGCAGTTCATTTGGAGTTCATGTTATTCTGCCTTATGCAAGGCAATGCATGGGATGCATATCGGCTTGCTTTATGCCTGGAGCAAGAAGAAGTTGATATTGATCCTGCATCAAAGATAATGATGGGTTTGACATTCTATGAGCCGTGA 522 0.4464 MCCKSHGGRKCCSFAGCTKSARGGADSCVQHDGGSPKACSRLRYLFRRLVKQHHWVEGSGVLSAYMKGTLNDTSPFRNRFKCWVLLELLKHVKNHSSNPTRIKNLYDIWSKKIRSMKGWPLESRYAVHLEFMLFCLMQGNAWDAYRLALCLEQEEVDIDPASKIMMGLTFYEP* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01145 173 Pfam TAF RNA Polymerase I subunit A 49 172 IPR039495 GO:0000120|GO:0006360
Rops3g01145 173 PANTHER TAF RNA POLYMERASE I SUBUNIT A 40 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01145 Rops-Chr3 16021991 16022763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01145 3 34 WRKY Transcription Factor Family AT4G12020 53.125 4.80e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01145 - - vum:124828781 226.098