Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01134 ATGTTGTTGTTCTTAACCTCTTCGAGCATAACAGACAACACAACAACATCATCATGTTCCGCTAAGGGTCAAAAATATGAACTTGTTACTACAATTACTCATCATGGAAGGGAGCCTTCGAAAGGGCACTACACAGCTGATGCCCAGTACCCCAATGATCGGTGGCTACGTTTTGATGATGCATCTGTTTTTGCTATTGGAGCAAATAAGGCCCTGCATGATCAGGCTTATGTCCTTTTCTACAAACAGATAGGTCTTCATCAGGAAGCTCTGAAATCATTTAGAAAAGCATTGGATATTGAGCCCAACCATGTGCCAAGTTTGATATCCACAGCCTGTGTTCTCAGACAGCTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTAAGGCTCGACAGAACAAACCCATCTGCATGGTACAATCTTGGACTGCTCTGCAAAGCTGATATGGGAACATCAGCACTGGAAGCTATTGAATGCTTTGAGGCAGCAGTTCTTCTTGAAGAATCTTCTCCTATTGAACCCTTTAGATAA 549 0.4262 MLLFLTSSSITDNTTTSSCSAKGQKYELVTTITHHGREPSKGHYTADAQYPNDRWLRFDDASVFAIGANKALHDQAYVLFYKQIGLHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLCKADMGTSALEAIECFEAAVLLEESSPIEPFR* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01134 182 Gene3D Cysteine proteinases 3 81 - -
Rops3g01134 182 Pfam Tetratricopeptide repeat 80 104 IPR019734 GO:0005515
Rops3g01134 182 Gene3D Tetratricopeptide repeat domain 82 179 IPR011990 GO:0005515
Rops3g01134 182 SUPERFAMILY Cysteine proteinases 7 84 IPR038765 -
Rops3g01134 182 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Rops3g01134 182 CDD Peptidase_C19 7 82 - -
Rops3g01134 182 Pfam Ubiquitin carboxyl-terminal hydrolase 14 81 IPR001394 GO:0004843|GO:0016579
Rops3g01134 182 Coils Coil 182 182 - -
Rops3g01134 182 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 84 IPR028889 -
Rops3g01134 182 PANTHER PROTEIN NPG1 75 182 IPR043376 -
Rops3g01134 182 SUPERFAMILY TPR-like 80 174 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01134 Rops-Chr3 15779562 15786672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01134 79 182 Calmodulin-binding Proteins AT4G28600 52.830 1.78e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01134 K21843 - gmx:100789469 185.652