Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01120 ATGGGTGAAGCTTTGGAATGTGAAGAACGACCTAAATACAGAGATATTAGACTATTTTTGCCATTACTGTGGAATCTGCAGATCCAAAAAGACCCTTATTACCTTTCACATCAATTCACACCACAAGTTAACTTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTAAGAGCCCATGTTAACTCATGCCATCAATATGAGACATGTGGCACTTGTGGGACTAAGCAACTGAAGAAGAATATTAAGAGCACACATGAACCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTAAATCTAATCTTCACAAGCATGAGAAGGCTGTGCACTTCAAAGAAAAGCTTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGATAAAACTGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCCAGGGGAGGGAAGAAAAGAAAATATCCTACTGTTGAAATGTTAGTGAGGAAGAGAGTTACCCTACCAAGTCGAATTGGTTACTTATGCAGGATAGTGAGGAAGATGTGCATTGATCCAACGCGATATTGA 669 0.4036 MGEALECEERPKYRDIRLFLPLLWNLQIQKDPYYLSHQFTPQVNLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYETCGTCGTKQLKKNIKSTHEPSSSSETFKCEFKGCDCTFSSKSNLHKHEKAVHFKEKLFVCGFDGCGMRFAYKHVRDNHDKTGKHVFTLGDFEEADEEFRSRPRGGKKRKYPTVEMLVRKRVTLPSRIGYLCRIVRKMCIDPTRY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01120 222 ProSitePatterns Zinc finger C2H2 type domain signature. 107 130 IPR013087 -
Rops3g01120 222 ProSitePatterns Zinc finger C2H2 type domain signature. 52 75 IPR013087 -
Rops3g01120 222 Gene3D Classic Zinc Finger 100 177 - -
Rops3g01120 222 PANTHER ZINC FINGER PROTEIN 36 200 - -
Rops3g01120 222 SMART c2h2final6 50 75 IPR013087 -
Rops3g01120 222 SMART c2h2final6 136 162 IPR013087 -
Rops3g01120 222 SMART c2h2final6 105 130 IPR013087 -
Rops3g01120 222 ProSitePatterns Zinc finger C2H2 type domain signature. 138 162 IPR013087 -
Rops3g01120 222 SUPERFAMILY beta-beta-alpha zinc fingers 102 143 IPR036236 -
Rops3g01120 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01120 Rops-Chr3 15353161 15355648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01120 32 165 C2H2 Transcription Factor Family AT1G72050 55.474 1.25e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01120 K09191 - gmx:100801812 272.707