Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01118 ATGCCACGGGGAAAGGCCAATTCTTCATCAGTTGCTATGCCATCCGAACCTGAAAAGCCAGTTGAATCCGATGAGAAGATCGATTTTGATGAGGCTAATGATCATGAAGAAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAAGAAGAAGTGGAAGAAATAGAAGAGGAGGTCGAAGAGGTGGAAGAGGAGGAGGAGGTAGAGGTAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGTTGAAGAAGTGGAAGAAGATGATGCCAAGGTGGAAGATGAGGAAGAGAAGAAAAAGCATACTGAACTTCTTTCTCTTCCTCCTCACGGGTCTGAAGTCTACGTTGGTGGCATTCCTCTTGATGTCTCAAATGAGGATTTGAAAGCTTTTTGTGAGCGTATTGGGGAAGTTGTAGAGGTTCGAGTAATGAAAGGAAAAGATTCTTCCGAGAATAAGGGCTTTGGTTTTGTGACTTTTAGAAATGTGGAATTGGCATCTAAAGCCATTGAAGAGCTGAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCTAAATCTCAAGCAAAAAACCGTCTTTTTATTGGCAATGTTCCCAGAAGCTGGGTTGAGGAAGATCTGAGGAAGATTGTGACTGAGATTGGACCTGGAGTTATCGCGGTAGAACTAGTCAAGGATATGAAGAACACTATCAATAATCGTGGCTTTGCTTTTATTGACTATCATAATAATGCATGTGCTGAATATTCAAGGCAGAAGATGATGAGCCCAACATTTAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCAAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAAGCAGTATACGTGAAAAACCTTCCTAAGAATGTTACTCAAGAACAGTTGAAGAAGCTTTTTGAGCACCATGGGAAGATCACCAAAGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATCGGCTTTGTACATTTTGCTGAGAGATCAAATGCTATGAAAGCACTGAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAAAAATCTGGAGCATCAAATACACAGAAGCAAGGATTGCTCCCAAGTTATCCACCACGTGTTGGTTATGGTTTGGTTGGGAGCCCCTATGGTGCACTTGGTGGAGGATATGGTGCTCCAGGTCTTGCACAGCCTTTGATGTATGGTCCGGGTCAAACTCCCAATGGAATGGCCATGATGCCTATGCTTCTGGCTGATGGACGCATTGGATATGTCTTGCAACAACAGGGAGTGCAGCCACAAACTCCACCCTCGCATCAAAGAGGTGGCAGGAGTGGTGGTGGGGGGAGTGGTAGCAGGAACTCCGGCAGTTCAAGTAAAGGAAGGCACAGCAATGATGGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1485 0.4411 MPRGKANSSSVAMPSEPEKPVESDEKIDFDEANDHEEMEEEIEYEEVEEEEEEVEEIEEEVEEVEEEEEVEVEEEEEEEEEEEEEVEEVEEDDAKVEDEEEKKKHTELLSLPPHGSEVYVGGIPLDVSNEDLKAFCERIGEVVEVRVMKGKDSSENKGFGFVTFRNVELASKAIEELNNTEFKGKKIKCSKSQAKNRLFIGNVPRSWVEEDLRKIVTEIGPGVIAVELVKDMKNTINNRGFAFIDYHNNACAEYSRQKMMSPTFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQILECSLAKPQADQKSGASNTQKQGLLPSYPPRVGYGLVGSPYGALGGGYGAPGLAQPLMYGPGQTPNGMAMMPMLLADGRIGYVLQQQGVQPQTPPSHQRGGRSGGGGSGSRNSGSSSKGRHSNDGGQGRRYRPY* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01118 494 Coils Coil 33 102 - -
Rops3g01118 494 FunFam RNA recognition motif-containing protein 21 196 - -
Rops3g01118 494 CDD RRM_SF 118 190 - -
Rops3g01118 494 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
Rops3g01118 494 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 486 - -
Rops3g01118 494 SMART rrm1_1 291 364 IPR000504 GO:0003723
Rops3g01118 494 SMART rrm1_1 117 190 IPR000504 GO:0003723
Rops3g01118 494 SMART rrm1_1 197 274 IPR000504 GO:0003723
Rops3g01118 494 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Rops3g01118 494 Gene3D - 24 196 IPR012677 -
Rops3g01118 494 SMART rrm2_1 117 190 IPR003954 GO:0003676
Rops3g01118 494 SMART rrm2_1 291 364 IPR003954 GO:0003676
Rops3g01118 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Rops3g01118 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 359 IPR000504 GO:0003723
Rops3g01118 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 259 IPR000504 GO:0003723
Rops3g01118 494 MobiDBLite consensus disorder prediction 447 494 - -
Rops3g01118 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Rops3g01118 494 MobiDBLite consensus disorder prediction 29 96 - -
Rops3g01118 494 SUPERFAMILY RNA-binding domain, RBD 113 282 IPR035979 GO:0003676
Rops3g01118 494 MobiDBLite consensus disorder prediction 447 482 - -
Rops3g01118 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Rops3g01118 494 MobiDBLite consensus disorder prediction 1 112 - -
Rops3g01118 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Rops3g01118 494 SUPERFAMILY RNA-binding domain, RBD 286 390 IPR035979 GO:0003676
Rops3g01118 494 Gene3D - 197 276 IPR012677 -
Rops3g01118 494 Gene3D - 277 409 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01118 Rops-Chr3 15306061 15316012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01118 118 466 Eukaryotic Initiation Factors Gene Family AT4G34110 26.371 1.24e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01118 K13161 - gmx:100806658 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01118 3 15306061 15316012 Rops3g01118 3 15306061 15316012 ECH