Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01117 ATGTCCGAGGCGGAGGAGTTACCCAGGGCTGTCGTGCGCCGCGTGGTTAAGGATAAGCTCTCCCGTTGCTCCGACGACGGTGACATTTCGGTCCACAAAGACGCTCTTCTCGCATTCTCCGAAAGCGCTAGAATCTTCATCCACTACCTTTCTGCAACGGCTAATGATATATGTAAGGAGTCAAAGAGGCAGATTATAAACGCTGATGATATTTTCAAAGCTCTTGAAGAAACTGAGTTCCCTGAGTTTATTCGCCCTCTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCGGCAGTGTCAAAGGAGAAGGGAAATGAGACGAAAAAGAAAAGAAAGTCTGAAGGTGAGTCACCTGGTAAAGGCGAGGCAGTGTCAAAGGGAAAGGGAAATGAGACGATAAAGAAAACAAAGTCTGAAGGTGAGTCATCTGATAAAGGGGAGGGTGAGGACAGTCAATAA 477 0.4633 MSEAEELPRAVVRRVVKDKLSRCSDDGDISVHKDALLAFSESARIFIHYLSATANDICKESKRQIINADDIFKALEETEFPEFIRPLKASLEEFRKKNAGKKAAVSKEKGNETKKKRKSEGESPGKGEAVSKGKGNETIKKTKSEGESSDKGEGEDSQ* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01117 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Rops3g01117 158 Gene3D Histone, subunit A 1 157 IPR009072 GO:0046982
Rops3g01117 158 MobiDBLite consensus disorder prediction 97 158 - -
Rops3g01117 158 FunFam DNA polymerase epsilon subunit 3 1 139 - -
Rops3g01117 158 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 138 - -
Rops3g01117 158 SUPERFAMILY Histone-fold 7 121 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01117 7 111 CCAAT-HAP3 Transcription Factor Family AT4G14540 30.476 1.69e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops3g01117 CBFD_NFYB_HMF 2.7e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01117 K02326 - gmx:100306382 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01117 3 15302596 15304431 Rops3g01117 3 15302596 15304431 ECH