Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01114 ATGTACCATCATCACCAACATCAAGGAAAGAACATTCATTCTTCTTCAAGAATGCCAATCCCTTCTGAAAGGAACATGTTCATTCAAACTGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTGCATCAATTAGGTGGAGCTGACAAGGCAACTCCAAAAACGGTATTGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAATTAACAACATGACACACAAAATTAGTGCAGCAGCAGGTGACAGACTCCCTGAAAACAATGGAACTCCTGTGAACAATTTAAACCTTGGCCCTCAGCCTAACAAGGATTTACACATAGTTGAGGCAGTGCAGATGCATATAGCTGTGCAGAGAAGGCTAAATGAACAACTTGAGGTTCAAAGACTCCTGCAGCTCCGGATAGAGGCACAAGGAAAATACCTGCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGGAGACAAAATTTGGGAGTAGTAGGACTTGAAGATGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGAGCTTGAATTCAGAGCTAAAGGAGTTACAAGTATTTAGTCCAAAGCAAACACAAACCAAACAACCAACTGATTTCTCCATAGACAGTTGCCTCACATCCTGTGATGGATCACAAAAGGAGCAAGAGATACAAAATGGCCACACATTTATACAACCAAAGGAAGTCATAGAGGCTCCCAAATGGTGTGATCCAATGAAAAACAACACCTTTCTTACCCCATTGGGCAAGAATGAAGAAAGAAGTCCAAGCAACTTATCTATGAGTATTGGATTAGAAGGAGAAACTGAGAATGGAAGCAGCATGTATCCTGAGAAAATAATGATGGGGAGACACTCAGAGGGTGAATCAATTAAACCAGTGGCTGAGAAGGTTTCTCAAGATTATAGATTGCCTTCTTACTTTGCAGAAACAACACTGGACCTAAGAACTGCATCAAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTAA 1134 0.4162 MYHHHQHQGKNIHSSSRMPIPSERNMFIQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVHQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRLSKNLHGQINNMTHKISAAAGDRLPENNGTPVNNLNLGPQPNKDLHIVEAVQMHIAVQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGVVGLEDAKVQLSELVSKVSSQSLNSELKELQVFSPKQTQTKQPTDFSIDSCLTSCDGSQKEQEIQNGHTFIQPKEVIEAPKWCDPMKNNTFLTPLGKNEERSPSNLSMSIGLEGETENGSSMYPEKIMMGRHSEGESIKPVAEKVSQDYRLPSYFAETTLDLRTASSCKQLDLNGFSWS* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01114 377 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Rops3g01114 377 FunFam Myb family transcription factor 45 103 - -
Rops3g01114 377 Gene3D - 45 103 - -
Rops3g01114 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Rops3g01114 377 Pfam MYB-CC type transfactor, LHEQLE motif 145 191 IPR025756 -
Rops3g01114 377 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Rops3g01114 377 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 308 IPR044848 GO:0003700
Rops3g01114 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01114 Rops-Chr3 15260970 15264469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01114 78 377 G2-like Transcription Factor Family AT3G04030 46.471 5.11e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops3g01114 Myb_DNA-binding 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01114 - - gmx:100810396 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00541 7 6909919 6913058 Rops3g01114 3 15260970 15264469 PCT