Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01110 ATGGCGAGCCAAAGAATAGGAGAAACTGGTTTATCTGAGTCAGGGCCTTCAACTCACCATGTCCCTTATGGAGTTCTTCATGGGATTAATACCTCAACATCAAGCTTAATCAATCAAAGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTGCAAGGAATTAAGATTAGAAATGATGAAGCCAAAGCACCTTTGTTCACAGGCAGGCCTTCAGCTACTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACACCAAGAGTAGTAGCCTCTCTCACTTCTCCATCTTTGACCAATCCATATGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAAGCAAAACTGAGCTTCAGTTTGAAACAGACTCTCCAATAAGTATAAAGCCATCTTCTTCTTCTGATCATCATGCTTTTGATCAGCATCATTTGCAGCTTCAACAGCAACAACACCAACTTCAACAGGAGGCTGCAACTGATGCTTTAAGATCAGGCACATCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGGAAGGGAGCAGGTTCCACATCAGAAAAGACACTTGATGCAAAGGCACTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCATGCAGATTAAAGCTCACCCATATTGAACAAGACCTTCAAATAGCACGCTCTCAGGGACTGTTCATGGGTTGTGGTGTTGCTGGTGGCAATATAAGCTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGTTAGAAGATGATCACCGGCACATGGCGGAGCTCCGGACCGGACTGCAGGCGCCGCTGTCGGATAATGAACTGAGAGTCATTTTGGATGGATATTTGTCACATAATGATGAGATTTTCCGGCTGAGAGGGGTGGCTGCAAAATCAGATGTGTTTCACCTTATCAATGGCATGTGGACTTCCCCAGCTGAGAGATGCTTCCTCTGGATAGGTGGTTTTAAACCCTCAGAGCTCATCACAATGTTGATACAACAATTAGAGCCCCTAGCAGAGCAACAAATAGTGGGTATATATGGGTTGAGTCATTCATCACAGCAAGCAGAAGATGCTCTCTCTCAAGGTCTTGAACAATTGCAGCAGTCTCTAATTGACACCATCGCTGGTGGACCCATTGTTGATGGTGTGCAACAAATGGTCGTAGCCATGAGCAAGCTTGCAAACCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACCCTTCACCAATTATGTAGATTACTCACAGTTCGTCAAGCAGCAAGGTGTTTTCTAGTGATTGGAGAATATTATGGTCGTCTTAGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTCTATGATAAGCGATGATAACTCATGCCAAACAACCACGGAATTGCAAATGGTTCAACCTTTTCAGAGCCATTTCCCAAGCTTCTGA 1533 0.4449 MASQRIGETGLSESGPSTHHVPYGVLHGINTSTSSLINQRSAFDFGELEEAIVLQGIKIRNDEAKAPLFTGRPSATTLEMFPSWPMRFQQTPRVVASLTSPSLTNPYGGSKSGGESTDSGSGVNTLSSKTELQFETDSPISIKPSSSSDHHAFDQHHLQLQQQQHQLQQEAATDALRSGTSQNQSAAKSPQEKRKGAGSTSEKTLDAKALRRLAQNREAARKSRLRKKAYVQQLESCRLKLTHIEQDLQIARSQGLFMGCGVAGGNISSGAAMFDMEYARWLEDDHRHMAELRTGLQAPLSDNELRVILDGYLSHNDEIFRLRGVAAKSDVFHLINGMWTSPAERCFLWIGGFKPSELITMLIQQLEPLAEQQIVGIYGLSHSSQQAEDALSQGLEQLQQSLIDTIAGGPIVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRESMISDDNSCQTTTELQMVQPFQSHFPSF* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01110 510 FunFam BZIP family transcription factor 207 256 - -
Rops3g01110 510 SMART brlzneu 204 280 IPR004827 GO:0003700|GO:0006355
Rops3g01110 510 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 249 IPR004827 GO:0003700|GO:0006355
Rops3g01110 510 PANTHER TRANSCRIPTION FACTOR TGA9 150 482 - -
Rops3g01110 510 Pfam Seed dormancy control 288 363 IPR025422 GO:0006351|GO:0043565
Rops3g01110 510 SUPERFAMILY Leucine zipper domain 208 247 IPR046347 GO:0003700|GO:0006355
Rops3g01110 510 ProSiteProfiles DOG1 domain profile. 271 479 IPR025422 GO:0006351|GO:0043565
Rops3g01110 510 MobiDBLite consensus disorder prediction 159 206 - -
Rops3g01110 510 MobiDBLite consensus disorder prediction 99 126 - -
Rops3g01110 510 Pfam bZIP transcription factor 207 236 IPR004827 GO:0003700|GO:0006355
Rops3g01110 510 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 211 226 IPR004827 GO:0003700|GO:0006355
Rops3g01110 510 Gene3D - 207 255 - -
Rops3g01110 510 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01110 Rops-Chr3 15222007 15229950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01110 155 510 bZIP Transcription Factor Family AT1G08320 68.908 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g01110 DOG1 6.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01110 K14431 - gmx:100101904 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00542 7 6947703 6954624 Rops3g01110 3 15222007 15229950 PCT