Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01107 ATGAAGAATATGGGTTTGATGGAGTGTGATGTAGAGAAAAAGAATATGTACCTTGATGCCCCAACTTTCATTGAGTGGCTCAAACCATCTTCTACTCCTTCATATCTAACTTCCACAGTATCATCATCATCTTCATCTGCCACTCAGAATGAGATTGTCCAAGAAACTATCCAATTCTTGCCCATTTTAAGTGGAAAGATCTCAAAAGATGAAGAGAATCAAGTACAACAAATGAAGGGTTTTGAGGTGAAAGAAGAAAAGGTAGAACAAGTGACTGTGGCTTTGCACATTGGATTGCCTGAAACTAAAGATGAGAAGATGGTTTTCCATGTTAAGGGAGAAGAGCCATCAAATAATAACAAAACCTTCCATGGATGCTCTGAGAGAAGGTTTTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCCATGCAGTTTGCTTGCTCCATATGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTCAGGAAAGGACCAGATTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTATTGTTGTGCCCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCTTTGAAGGACTTTAGAACACTCCAAACTCACTACAAAAGAAAGCATGGGACAAAACCATTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGAACTCATGAAAAGAATTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCTCTCAAAGATCACATTAGATCCTTTGGAAAAGGTCATAACCCACATCCTTCTCTTGAAGCATTTGATGAGGAAAAGGAATGCATTACTGGTTCAGATGAAGATGAATTTGCTCATACATGA 927 0.3981 MKNMGLMECDVEKKNMYLDAPTFIEWLKPSSTPSYLTSTVSSSSSSATQNEIVQETIQFLPILSGKISKDEENQVQQMKGFEVKEEKVEQVTVALHIGLPETKDEKMVFHVKGEEPSNNNKTFHGCSERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEAFDEEKECITGSDEDEFAHT* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01107 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 250 IPR013087 -
Rops3g01107 308 SMART c2h2final6 230 250 IPR013087 -
Rops3g01107 308 SMART c2h2final6 193 225 IPR013087 -
Rops3g01107 308 SMART c2h2final6 146 168 IPR013087 -
Rops3g01107 308 SUPERFAMILY beta-beta-alpha zinc fingers 216 250 IPR036236 -
Rops3g01107 308 FunFam Zinc finger protein WIP2 199 281 - -
Rops3g01107 308 Gene3D Classic Zinc Finger 226 286 - -
Rops3g01107 308 PANTHER ZINC FINGER PROTEIN WIP2 30 298 IPR043584 GO:0003700|GO:0010468
Rops3g01107 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Rops3g01107 308 SUPERFAMILY beta-beta-alpha zinc fingers 126 169 IPR036236 -
Rops3g01107 308 Gene3D Classic Zinc Finger 145 168 - -
Rops3g01107 308 Pfam Zinc finger, C2H2 type 146 165 IPR013087 -
Rops3g01107 308 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01107 Rops-Chr3 15161435 15165130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01107 12 298 C2H2 Transcription Factor Family AT1G08290 55.162 1.83e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01107 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01107 - - gmx:100802773 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00552 7 7047383 7050560 Rops3g01107 3 15161435 15165130 PCT