Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01104 ATGGCGGAAGAACAAAGATTCCAAGCTCCGCGTCTCTGTGCTTACAACTGTGGCTTCTTCGGAAGTCCAATGACACAAGATCTTTGTTCCAAATGCTATCGTGATTTGCAGCTCAAGGAACAACGATCTTCCTTTGCGAAATTGGCCTTCAACCAAACCCTAATTCCTCCACAATCGCCATCTCTGACAGTTTCTTTGCTGTCTTCTTCATCTCCGTCACCGCCGGAGGCAATCGCATCTGCTTCACAAACCTCATCGACGGAGGATAAAACTGGATCGGCGACGCATCGGAACCGTTGCTCGACGTGCAGGAAGCGCGTGGGACTCACGGGATTCAAGTGCAGGTGCGGGTTGATGCTATGCGGGAACCATCGGTACCCAGAACAACACGGTTGCGGGTTCGATTTCAAAGGGATGGATAGGGATCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGTGAGAAGCTTCACAAGATCTGA 480 0.5146 MAEEQRFQAPRLCAYNCGFFGSPMTQDLCSKCYRDLQLKEQRSSFAKLAFNQTLIPPQSPSLTVSLLSSSSPSPPEAIASASQTSSTEDKTGSATHRNRCSTCRKRVGLTGFKCRCGLMLCGNHRYPEQHGCGFDFKGMDRDQIAKANPVVKGEKLHKI* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01104 159 SUPERFAMILY AN1-like Zinc finger 88 154 IPR035896 -
Rops3g01104 159 FunFam Zinc finger AN1-type containing 6 75 155 - -
Rops3g01104 159 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Rops3g01104 159 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 159 - -
Rops3g01104 159 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Rops3g01104 159 Gene3D - 86 145 IPR035896 -
Rops3g01104 159 Pfam AN1-like Zinc finger 100 136 IPR000058 GO:0008270
Rops3g01104 159 ProSiteProfiles Zinc finger AN1-type profile. 94 140 IPR000058 GO:0008270
Rops3g01104 159 SMART AN1_Zf_4 100 137 IPR000058 GO:0008270
Rops3g01104 159 MobiDBLite consensus disorder prediction 61 91 - -
Rops3g01104 159 Gene3D - 1 85 - -
Rops3g01104 159 MobiDBLite consensus disorder prediction 61 96 - -
Rops3g01104 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
Rops3g01104 159 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01104 Rops-Chr3 15139625 15140544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01104 1 159 C2H2 Transcription Factor Family AT3G52800 48.555 4.24e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01104 - - gmx:100807363 201.83