Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01100 ATGTATAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAACAAGCGGTGCAAGAAGACAATGCTGGAAACTACTCTAAAGCCTTCCCTCTATACATGAACGCCTTGGAGTATTTCAAAACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAAGAAGCCATCACTCAGAAATTCACTGAGTATATTCGCCGTGCCGAGGAGATCCGTTCGGTACTTGACAATGGTGGGCCCGGCCCGGCGTCTAACGGGGACGCTGCGGTGGCAACGAGGCCCAAGACGAAGCCCAAGGATGGAGATGGAGATGGGGAGGATCCTGAGCAGTCTAAGCTTCGGGCCGGGCTGAACTCGGCGATCGTGAGGGAGAAACCGAATGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGTGCGAAACAGGCGTTGCAAGAGGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTCTTCACTGGTAAAAGACGCCCTTGGAGGGCATTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACTGAAGCTGATTCTACATTTTTCAGTATCTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCCAAATGGCTCGTGACAGTGAACCTTCTATCATATTTATTGATGAAATTGATTCTCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAAAAAGTTCTCGTTCTTGCAGCTACAAATACACCTTATGCTCTCGATCAGGCAATAAGGCGGCGTTTCGATAAGCGAATTCACATTCCACTGCCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAGGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGGTTTTCTGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGAACAAAGCAACAGAGTGCAGTACAAATTACAATGCAGGACCTTGCTGCACAAGGACTTGCTTCTCAGATCCTTCCTCCACCTATATCAAGACCCGATTTTGACAAAGTACTTGCTAGACAAAGACCTACAGTAAGCAAAGCTGACCTTGACGTTCATGAGAGATTCACGAAGGAGTTTGGAGAGGAAGGTTAA 1299 0.4627 MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYIRRAEEIRSVLDNGGPGPASNGDAAVATRPKTKPKDGDGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARDSEPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIHIPLPDLKARQHMFKVHLGDTPHNLTEGDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGTKQQSAVQITMQDLAAQGLASQILPPPISRPDFDKVLARQRPTVSKADLDVHERFTKEFGEEG* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01100 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 427 IPR027417 -
Rops3g01100 432 Pfam Vps4 C terminal oligomerisation domain 365 429 IPR015415 -
Rops3g01100 432 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Rops3g01100 432 SMART smart 2 79 IPR007330 -
Rops3g01100 432 Gene3D - 297 412 - -
Rops3g01100 432 SUPERFAMILY MIT domain 2 81 IPR036181 -
Rops3g01100 432 SMART AAA_5 161 297 IPR003593 GO:0016887
Rops3g01100 432 FunFam Vacuolar protein sorting-associated protein 4 124 304 - -
Rops3g01100 432 Gene3D - 6 75 - -
Rops3g01100 432 PANTHER AAA DOMAIN-CONTAINING 16 430 - -
Rops3g01100 432 Gene3D - 124 420 IPR027417 -
Rops3g01100 432 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Rops3g01100 432 CDD RecA-like_VPS4 123 293 - -
Rops3g01100 432 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Rops3g01100 432 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Rops3g01100 432 MobiDBLite consensus disorder prediction 71 116 - -
Rops3g01100 432 CDD MIT_VPS4 4 77 IPR045253 -
Rops3g01100 432 MobiDBLite consensus disorder prediction 91 109 - -
Rops3g01100 432 FunFam vacuolar protein sorting-associated protein 4A 297 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01100 Rops-Chr3 15113743 15119076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01100 160 353 Calmodulin-binding Proteins AT3G56690 36.735 7.50e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01100 K12196 - gmx:100788150 799.66