Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01080 ATGATGGCTTCCGTAGAAAATAAGATTAAAACTGGAGGAGTTGGAGTTGGAGGAGGATTAGTTGTTGGGGGTCAAACTCAAACTCAAACTTTAGTTGCTGAGATGAAACTGCTGAAAGAAATGCAGGAACATTGTGGCCCTCTTGTGTCGTTGCCTCAGGTGGGGAGTCTTGTGTATTACTTCCCTCAGGGACATAGTGAACAGGTGGCAGCTTCCACTAGAAGAACAGCAACCTCACAGGTTCCAAACTATCCCAATCTTCCATCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTGCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTCCAACCACTGAATTCTGAAAAAGAAGTCTTCCCTATATCTGAGTTTGGGGTAAAGCACAGTAAACATCCAAGTGAATTTTTGTGCAAAACTTTGACTGCTAGTGACACAAGCACACATGGTGGCTTTTCTGTTCCACGCAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACAATTCAACCACCAACCCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGGCATATATACCGGGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTTGTAGGCTCAAAAAGGCTTAGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGAGAGTTGGTGTCAGGCGTGTTAATCGTCAACAGACAACACTGCCATCATCAGTGCTTTCTGCTGATAGTATGCACATTGGTGTGCTTGCTGCTGCAGGTCATGCTGCTGCTAATAGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTATTCCACTAGCTAAATACAGAAAATCTGTATATGGGACTCAGCTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGTAAGCGCAGATATATGGGCACAATTGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAACCTGGGTGTGGTGATAAGCAGAATAGAGTTAGTGTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTAAAACGGCCATTACAATCTGGACTTTTGGAAAATGAATGGGGACCTTTGTTAAGAAGACCTTTTATAAAAGTTCCTGAAAATGGAACAATGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAGCAACTGATGAAAATGCTTTTTAAACCACAAGTTATTAACAATAATGGAGCCTTTTTATCTGCCATGCAACAAGAGTATGCTGCTACAAGAGGTCCCTTACAAGAGATGAAGACCACACTGGCAACAGAGAACCCAAAAGTTCATCTTGCCAACATGCATTCTCATTCTGTCCCTGACCAACCTAATGCCTTAAACATGCATTCACTGTTGAAAAGTGATCAACCTGAAAAATTGCATGCTCAGGCCAAAATGGATAATCATCTGCCGTCTGGAATGGTTACTGATAAGCCAAAAATAGAATCTGAGGTTTTACCTGATAATATGTTTGACTTCCCTACCATGATGGAAGGATGCAACATTGAAAAAGTGGCAGCAAATCCTGTTAACCCGCAAAGCCTAGCAAGTCAATTGACATTCCATAATCAAAACCAGAATCCATTACTCAGTCAATCTAGTTCTTGGTCAATGCAGCCTCAGTTAGAATCATTGATGTCCCATCCTCAACTGATTGATATGGCTCAATCTGATTTTGCTATGGTAAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGTGAATTCTTCTTGCCAATCTTTTGCTGGGCAAAATACATCAACTGTGCCTTTATCAGATATGCAAGAACATACCTCAATTCAACCCCAAGCAGTGAATCCCACTTTACCTTCCATGAACCAAGAAGTGTGGGATCATGTCAAGAATTTGAAGTTTTTATCTAAAACTGACCAGCTAACATTCATCTCTCAATCTGGGCCATATGGCCTCAATGGTATATCTAATGCAAACAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAATAGTGTAAGTACCACCATGGTTGATCCTTCTACTTCAAGTACCATTTTGGATGAGTTTTGCACAATAAAGGACAAGGATTTTCAGCACAACCCACCACAAGATTGCATGGTGGGCAACTTAAGTTCAAGTCAGGATGGCCAGTCTCAGATAACCTCAGCAAGTCTAGCAGAATCACATGCCTGTTCTCTGAAAGACATTGCTGACAACTCAGGTGGTACATCTTCAAGTCATGTTGATTTTGATGAAAGCAGCTTTCTACAGAATAACTGGTGGCAGCAAGTAACTGCGCCTTTCAGAACCTACACGAAGGTGCAAAAGGCAGGTTCTGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGAACCGCGCAATCGAATGCATGTTTGGAATCGATGGTCTTCTAAATGACACCAAAGGTTCTGGATGGAAATTGGTATATGTAGATTATGAGCATGATGTTCTACTTGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGTGTCCCGTGTATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAGGGTATGAAGCTTCTAAACAGTGGAGCATTGCAAGGGATCGATGTTTGA 2784 0.4174 MMASVENKIKTGGVGVGGGLVVGGQTQTQTLVAEMKLLKEMQEHCGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQVPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEVFPISEFGVKHSKHPSEFLCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAGHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGPLLRRPFIKVPENGTMELSNSMPNLYQEQLMKMLFKPQVINNNGAFLSAMQQEYAATRGPLQEMKTTLATENPKVHLANMHSHSVPDQPNALNMHSLLKSDQPEKLHAQAKMDNHLPSGMVTDKPKIESEVLPDNMFDFPTMMEGCNIEKVAANPVNPQSLASQLTFHNQNQNPLLSQSSSWSMQPQLESLMSHPQLIDMAQSDFAMVNGLLPQLDIDEWMVNSSCQSFAGQNTSTVPLSDMQEHTSIQPQAVNPTLPSMNQEVWDHVKNLKFLSKTDQLTFISQSGPYGLNGISNANNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSTILDEFCTIKDKDFQHNPPQDCMVGNLSSSQDGQSQITSASLAESHACSLKDIADNSGGTSSSHVDFDESSFLQNNWWQQVTAPFRTYTKVQKAGSVGRSIDVTTFKNYEELNRAIECMFGIDGLLNDTKGSGWKLVYVDYEHDVLLVGDDPWEEFVGCVPCIRILSPSEVQQMSEEGMKLLNSGALQGIDV* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01080 927 ProSiteProfiles PB1 domain profile. 821 905 IPR000270 GO:0005515
Rops3g01080 927 Pfam B3 DNA binding domain 143 243 IPR003340 GO:0003677
Rops3g01080 927 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Rops3g01080 927 FunFam Auxin response factor 816 910 - -
Rops3g01080 927 Pfam Auxin response factor 269 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops3g01080 927 CDD B3_DNA 141 242 IPR003340 GO:0003677
Rops3g01080 927 Gene3D - 140 243 IPR015300 -
Rops3g01080 927 SMART B3_2 142 244 IPR003340 GO:0003677
Rops3g01080 927 Gene3D - 817 910 - -
Rops3g01080 927 FunFam Auxin response factor 306 378 - -
Rops3g01080 927 Gene3D - 306 378 - -
Rops3g01080 927 Pfam AUX/IAA family 820 908 IPR033389 -
Rops3g01080 927 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 911 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops3g01080 927 SUPERFAMILY CAD & PB1 domains 834 899 - -
Rops3g01080 927 SUPERFAMILY DNA-binding pseudobarrel domain 132 270 IPR015300 -
Rops3g01080 927 FunFam Auxin response factor 140 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01080 Rops-Chr3 14530672 14535838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01080 30 925 B3 DNA Binding Superfamily AT1G19850 58.513 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops3g01080 AUX_IAA 9.8e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01080 K14486 - gmx:100813003 1541.94