Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01069 ATGAGCGGCGACGGCCGGAGATGGAACCGGAACGACACCAGGAACTCCAAGAAGCAGAGGCTGATCCGCAGCGCCGAGGAAGAGCTTGAGGCGAAGTTAGGGCTCGATCTTTTCTCAGAGGGAAAAAAGCGACTTGGATGGTTACTCACTTTTGCATCTTCATCTTGTGAGAATGAAGAAACCCACAGAGTCTACAGTTGTGTTGATCTTTACTTCGTTACACAGGATGGGTCAACATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGACAACGTTATGAAAGTCAGATTGCAGATATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTTTTTAAAGCTTTCATTTGATACCGTGCAACAATTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCCGCAGAAGCCTATGAGTCCATATTAACAGGAAGAAGAGAACAAAGGCCTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCCATTGACAATGATATACGGTCTGGCCAGTGGTATGATGTTGGAGTTTCCAATAATGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTCGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATATATGGTAGATGGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAGACCTGGTATCTACGTGACATATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAGACCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTTCAATGCGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGTAGCCAAGGGCTGAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCGTTGGAAGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCCGATGCTGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACTATTATTCCCATGCCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGCCATGTGGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCAACTAGTTTTTCACTCGAGCCATCTGCCTATGAGCAATTGATCAACAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCTATCATGGAAAAGCTTGTAATATTACGAGATGCACCAATACGTGAAGAATGCCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCACCATCAATTGTTACGGATGAGATATGCACTGCATGTGACTTTAATCGTCCTGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGAGTATTATCATTTAAAGAACCAGAATGAGTTTGATGAGAGGTCATCAAAATCTTTTCCTGACCTGCCCAAGTCTGAGCAGCAGTCAAGACTAAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGACAGAAGATATGAATATAAAGGCCTTAATAAGGTCTGGAAGGGAAAATTATCAGAGGCCAAGGCCAGTGGAAATTCTATAAAGATCCAGGAAGCACAAGATATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAATGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATACACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGATACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCCGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAGGAAGTTGACAATCTCATATCCTTGTGTCATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAGTACCAGACTCTCACAGATCCAAGTAGGAAAACTTATACAACTCGTAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTCGACAAGTTTTTGCATGGTTCAACCTTAAAGGAATGCTATTCAGCCGTCGCTTCAGTGGCAAACCTCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCGTGTGCTGTCACCACTGCTAGACGTCTTGCTGACTTTCTTGGGGATACAATGGTCAAAGACAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCAGTAAGTGAGCGTGCTGTTCCGGTGGCAATATTTGAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCGGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCCAATCCTGTCCCTAGGGTAGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAGGTTTCGCCAACGAAAATTAGTTGATGTCTTTAAATCAATGAACAGGGATGAGTGCTCAAAAAAGCATAACGATTCTCACGGTGTCTACCTTGTGATGGGTGATGAGACTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCCGGAGTTCTGCATGTGGTCCTAGACCAATTATACGGAATTATGAAGCTAATAATGAACGGCATTCAGTGAAGCTCAATTGTCAAGAAGATACCGAGCAACAACATAATGATAGTAACAGCATGGATCAGCCACTTTCACTATTACAACAAAATGAAATATTGAGTGAAACCGTTGACAGAACTGTAGACTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAGATATGCTGGAAAGGAGAAAGAAGCGAAGATTGGAGAATTCAAAGAAATCTGACCATTTAAATGGTATTCTTGAACAAATGAATGGTAAGATAAATCAGGGCAGAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGTCCTAACACGGTGCCATTGGCAGATAATACAGCTAGTTCACAGTTTACAGATTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGATTATGCTTAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAACTCTAGATCACCCATTACTGAAGAATTTCTGGGGAAACGTGTCAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACCTGTATGAGGTCACAATTGATGAAGTTCAATATAGGGAAGCAAGCAAAAAACTTGCAGCGCTTCTGGCTGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAACGCTATAGTCCAGCTTGGTTGCGTATGTAAGGTGGACAAAACTGCTAAAAAACGTAGTCTACAAGAGCCTTGGAGTTTGAGTGAATTGCACATGAAGACTACTACAGAATGTGCTTATCTCGAACAATCTATATCCTTCTTTTACTTGTACCATAGCATGTCGGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAAATTTTCTTGAAAAACAATTTCACGATGCTTGCCAAGCTTTGTCTATTGAGCCACCTCCCAGGAATGGCATTAGTTGTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTAATGCAAAGAGTAATAAATGATCACAGGAGTGAACATCATGGGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAACTAGTAAAATTGGGTATTCGAGCTCTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCAGTCCAGTGGCTAAATGAGAGAATTGCTCTATCAAGATATTCCCATGTACCACTGGGGAACTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTTTCAAGAGCTTTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGTCTTCCAGATTTGGGTGGCATTAATGGTGAAGAGAACTGTTTTGTTGATGAGGTTCACCAACCTGTTCTTACGTATCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCTCTTCTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTTGATCATGAATTTGATTCTGAAGCATTTTCCATGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGTGCACATGCCTTTCGAGTCCTAAAACAGTTGATCCAGCGGTGCCTTGCAGATGCAGTTACATCTGGAAATGTTTTTGCTGATGCATTATTGCAACATCTATATAGATGGCTTTGCAGCCCTCAATCAAAACTTCATGATCCAGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTCCGAAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATAGACACAGGGAAATTTGATCTGTCTACAGCCAAAGCTTACTGTGATAGTTTGTTAAGAACTATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACAGCAGTTCTGGTGCTCATTGCTCTTCATGGACCAGTATAACTACGGCGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCCGAATACTTACCAAAAAAAATCCAAGACCATTTTGTTTTCATTGTTTCTCAATTCATGTATATTCCTTGGAATTATGCACAAAATCAAGCAGCAGTCAGGGCTTCGTTGCAGAGTGGTGATTCTTGCACCCCATCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCTGAAATAACGAAATATATTAAAGGGCAGATTAGTTCTTACTTCACAGACAAACTGCTAGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGAGCAGGTCAGAAAACGACCAGGGTGCATCATCTGGCCTTCCTCAACCTATGGGTGATCCCCATAGAGGGGATGCAGCGTTGGAATTTGTCAAGCATGTCTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGATGTTTTGGTCATGAGAAAGAATTTGTTGAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCGTAATCCTTGTAATTCCTTCATCTTACCCAATGTCATCTGCAGCTATTGTAATGACTGCAGGGACTTGGACTTGTGCCGTGACCCAGCTTTATTGAATCAGGAGTGGCGTTGTACCGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAAAATGCTCTTCTTCAGATTGTACGACAAAGGGAGCGGCTATACCACCTGCAAGATCTGGTGTGTCTCAGGTGCAACCAAGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGTAAGAGAATTTCGAACAAAGATGCAGGTTTTCTTGAACATAGCTTCACGGCAGAAATTCCAACTTCTCCTAGAATGTACCTCCTGGATTTTAGAACTTAGTTAA 6621 0.4099 MSGDGRRWNRNDTRNSKKQRLIRSAEEELEAKLGLDLFSEGKKRLGWLLTFASSSCENEETHRVYSCVDLYFVTQDGSTFKTKYRFRPYFYAATKDKMEMDVEAYLRQRYESQIADIEIIEKEDLDLKNHLSGLRKSFLKLSFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILTGRREQRPQDFLDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVGVSNNGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVRPGIYVTYNGDFFDWPFLERRADHHGFKMSDELGFQCDMNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFSLEPSAYEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLVILRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFMAKKSEYYHLKNQNEFDERSSKSFPDLPKSEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPSRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLKECYSAVASVANLWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDRFRQRKLVDVFKSMNRDECSKKHNDSHGVYLVMGDETVNDLEDFGNKGRSSACGPRPIIRNYEANNERHSVKLNCQEDTEQQHNDSNSMDQPLSLLQQNEILSETVDRTVDYQGWLQIKKRKWKDMLERRKKRRLENSKKSDHLNGILEQMNGKINQGRSNVSSYFRRHEVVLTRCHWQIIQLVHSLQIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPITEEFLGKRVNKTLPHGRHSYNLYEVTIDEVQYREASKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKTAKKRSLQEPWSLSELHMKTTTECAYLEQSISFFYLYHSMSEGRAIYVGYFPASKAITVVVVNPYQNKDLSPNFLEKQFHDACQALSIEPPPRNGISCKVDYVAHVKDAETVMQRVINDHRSEHHGPMVAVIECPNVQLVKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKIGMQRCAASVQWLNERIALSRYSHVPLGNFELDWLIFTADTFFSRALRDNQQVLWISDDGLPDLGGINGEENCFVDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGFDHEFDSEAFSMNGQNGFDESTSCAHAFRVLKQLIQRCLADAVTSGNVFADALLQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKFDLSTAKAYCDSLLRTIQSRDLFEWIELEPQQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAQNQAAVRASLQSGDSCTPSINIGAAEAFESEITKYIKGQISSYFTDKLLGVVRDIVLHMKGMSRSENDQGASSGLPQPMGDPHRGDAALEFVKHVCAVLALDQSVQHDVLVMRKNLLKYVRVREFAPEAEFRNPCNSFILPNVICSYCNDCRDLDLCRDPALLNQEWRCTVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLAEQCACAGSFRCKEDVREFRTKMQVFLNIASRQKFQLLLECTSWILELS* 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01069 2206 Gene3D Palm domain of DNA polymerase 745 931 IPR023211 -
Rops3g01069 2206 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Rops3g01069 2206 CDD POLBc_epsilon 503 1116 - -
Rops3g01069 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2204 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Rops3g01069 2206 Coils Coil 1198 1218 - -
Rops3g01069 2206 Gene3D - 935 1119 IPR042087 -
Rops3g01069 2206 Gene3D DNA Polymerase, chain B, domain 1 55 228 - -
Rops3g01069 2206 Pfam DNA polymerase family B 749 1058 IPR006134 GO:0000166|GO:0003677
Rops3g01069 2206 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Rops3g01069 2206 SMART polmehr3 239 836 IPR006172 GO:0000166|GO:0003676|GO:0003887
Rops3g01069 2206 CDD DNA_polB_epsilon_exo 240 443 - -
Rops3g01069 2206 FunFam DNA polymerase epsilon catalytic subunit 935 1119 - -
Rops3g01069 2206 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Rops3g01069 2206 SMART DUF1744_2 1508 1892 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Rops3g01069 2206 FunFam DNA polymerase epsilon catalytic subunit 717 792 - -
Rops3g01069 2206 FunFam DNA polymerase epsilon catalytic subunit 750 931 - -
Rops3g01069 2206 SUPERFAMILY DNA/RNA polymerases 486 1109 IPR043502 -
Rops3g01069 2206 Pfam Domain of unknown function (DUF1744) 1526 1892 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Rops3g01069 2206 Gene3D - 238 468 IPR036397 GO:0003676
Rops3g01069 2206 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01069 Rops-Chr3 14258932 14291497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01069 24 2203 Core DNA Replication Machinery Family AT2G27120 68.190 0.0 3056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01069 K02324 - gmx:100812003 3917.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01069 3 14258932 14291497 Rops3g01069 3 14258932 14291497 ECH