Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01062 ATGGCGAGGGAGGACAGTGTTGCTTCAAACCCTAGCCATGGAGAACGACCAAAGGTGGTCGTTATAACGGGCCCCACAGGTTCTGGTAAATCGAAGCTGGCCGTTGATTTGGCTTCCCACTTCTCCATCGAAGTCATCAACGCCGATTCCATGCAGGTCTACCGTGGCCTCGATGTTCTCACCAACAAAATCCCCCTCTCCGACCAAAACGGAGCACCGCACCATCTCTTAGGTACCGTAAGCCCAAACGTTGAATTCACCGCCAAAGCGTTTCGAGATTCTGCTATTCCCATCATCGATGCCATATTGTCACGCAACAACTTGCCCGTTATAGTTGGAGGCACAAATTACTATATCCAGGCTCTTGTGAGTCCGTTTCTTCTAGATGATTCGATGGAAGATATAGATGAAAACTGTTTGGGTGACCCACCTGGTATAACACAGCCTGATAACAGTTTCTTTGCTGAAAATGATAGTTCGAACTATAGTTATGACGTGCTTAAAAATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAATCAATATCTTAGTTTGTACGCTCGCACTGGTGTTCTTCCTAGCAAAGTTTTTCAGGGAAAGGCGGCAGAGAAATGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGTGTGGATGCGTCTTTCCCTGTACTGGATAGATATGTAGAACAGAGGGTAGATTGCATGATGGATGCAGGATTACTCAATGAAGTCTATGACATTTACACTTCGAATGCAGATTACACTAGAGGTTTGCGGCAGGCCATTGGCGTCCGTGAATTTGAGCCTCTTCTTAGAACTGGTATTGTTGAAGCCATATATAAAGGAGAGAAAGAATTGACTGAGGGATCCAGCATAGAAAAGGGTGAGCCATTGTTTAATGGTAATCTGATGGAGTGGTTGAGATCTTCCACTGATACTAAATCCAGATTACTTATAGAAGAAGCAATTGAAAAAGTAAAGGTTAACACCCGGAGACTTGTTCGCCGTCAGAAGAGGATGCTCAGTCGACTGCAAACACTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCAATATTAAGCAAATCAGATAATGTATGGACTTGCCAAGTGGTTGAATCTGCAGTGAATACAGTTAAATCTTTCCTTAGTGAGAATGGAAGCTTGTCATCAACCTTTGGGATGCCAAATGACACTGCGATGAAAATAACCCAGAGAGACCTCTGGACTCAATACATATGCAAGGCCTGCGGTGATCGAGTGCTTAGAGGGTTACATGAATGGGAACAACACATAAGAGGTCGTGGGCACCGAAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAGGTCTTAGTTTCATGGAAAAGAAGCTGGAGCATTCTGAATGCAAATATTCAAACATATTGTAA 1446 0.4302 MAREDSVASNPSHGERPKVVVITGPTGSGKSKLAVDLASHFSIEVINADSMQVYRGLDVLTNKIPLSDQNGAPHHLLGTVSPNVEFTAKAFRDSAIPIIDAILSRNNLPVIVGGTNYYIQALVSPFLLDDSMEDIDENCLGDPPGITQPDNSFFAENDSSNYSYDVLKNIDPVAANRIHPNNHRKINQYLSLYARTGVLPSKVFQGKAAEKWGQVDNLRYDCCFICVDASFPVLDRYVEQRVDCMMDAGLLNEVYDIYTSNADYTRGLRQAIGVREFEPLLRTGIVEAIYKGEKELTEGSSIEKGEPLFNGNLMEWLRSSTDTKSRLLIEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTESILSKSDNVWTCQVVESAVNTVKSFLSENGSLSSTFGMPNDTAMKITQRDLWTQYICKACGDRVLRGLHEWEQHIRGRGHRKRISSLKSKAQGLSFMEKKLEHSECKYSNIL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01062 481 FunFam LD10347p 151 208 - -
Rops3g01062 481 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
Rops3g01062 481 Gene3D - 17 419 IPR027417 -
Rops3g01062 481 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Rops3g01062 481 Gene3D Classic Zinc Finger 420 465 - -
Rops3g01062 481 Gene3D - 147 207 - -
Rops3g01062 481 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 282 IPR018022 GO:0008033
Rops3g01062 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Rops3g01062 481 FunFam tRNA dimethylallyltransferase 419 462 - -
Rops3g01062 481 MobiDBLite consensus disorder prediction 1 24 - -
Rops3g01062 481 Pfam IPP transferase 52 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01062 Rops-Chr3 14145041 14148533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01062 22 458 C2H2 Transcription Factor Family AT2G27760 57.273 1.82e-175 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01062 K00791 - gmx:100792690 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01062 3 14145041 14148533 Rops3g01062 3 14145041 14148533 ECH