Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01058 ATGGACTTTGAGAATGAATCTCCTCCTTCCACTTCATTATCATCTTCTTCTCCTATAAGCCAACAACTCCGATCATGCACACCCCTAAACCCTAATCCTAACAATTCATCATTGAGTTCATCTCACAAGAGGAAAGCAGGGAGGAAAAAGTTTAGGGAAACAAGGCACCCAATATATAGGGGTGTAAGGCAAAGAAATGGAAACAAATGGGTGTGTGAAATAAGGGAACCAAACAAGAAGTCAAGGATATGGGTTGGCACTTACCCTACACCTGAAATGGCTGCTAGGGCACATGATGTGGCTGTGTTAGCACTTAGAGGTACCTCCGCAGAGTTCAATTTCCCAGATTCAGCTTTGTTCCTTCCAGTTGCAAAGTCATGTTCAGCCATCGATATTAGAGCTGCAGCAGCAAAAGCCACTTATCAGGCTTTCAGCACAAACACCTCTTCTTCCTCTCACAACAATTTTTTTGGTGAAGATATTGATGCTGCTGCAGACCCTTGTTTGAATAAGAATAATGATGAGTCCAAAACAACATTCTTGGATGAAGAAGCACTGTATAATATGCCAGGTTTGTTAGATAGTATGGCTGAGGGTTTGCTTATTACCCCACCCTCTATGAAGAATGCAATGGATTGGGACAACATTGGTTGTGAAATAGACCTCACTCTATGGACCGACTAA 684 0.4225 MDFENESPPSTSLSSSSPISQQLRSCTPLNPNPNNSSLSSSHKRKAGRKKFRETRHPIYRGVRQRNGNKWVCEIREPNKKSRIWVGTYPTPEMAARAHDVAVLALRGTSAEFNFPDSALFLPVAKSCSAIDIRAAAAKATYQAFSTNTSSSSHNNFFGEDIDAAADPCLNKNNDESKTTFLDEEALYNMPGLLDSMAEGLLITPPSMKNAMDWDNIGCEIDLTLWTD* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01058 227 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Rops3g01058 227 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Rops3g01058 227 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Rops3g01058 227 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Rops3g01058 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 226 IPR045277 GO:0003700
Rops3g01058 227 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Rops3g01058 227 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Rops3g01058 227 MobiDBLite consensus disorder prediction 1 41 - -
Rops3g01058 227 MobiDBLite consensus disorder prediction 1 57 - -
Rops3g01058 227 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Rops3g01058 227 MobiDBLite consensus disorder prediction 42 56 - -
Rops3g01058 227 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Rops3g01058 227 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01058 Rops-Chr3 14038230 14038913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01058 39 226 AP2-EREBP Transcription Factor Family AT4G25490 50.000 1.97e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops3g01058 AP2 7.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01058 - - gmx:100793751 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01058 3 14038230 14038913 Rops3g01058 3 14038230 14038913 ECH
Rops7g00575 7 7324442 7325203 Rops3g01058 3 14038230 14038913 PCT