Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01050 ATGGACACTCCTGTCAACGAGCTCGAGGCTCTCCGAATTGATGATGATGATGATGAGGTTGAAAATGTCTTTTTTGGTTTTGTTGAAAAGTCTGAGAATCAATGGGATCAGCATGAGCAATGGAAACACCATCCAGAGAGACCATCTAGAAGTGTGAAGGTTTTCCGTTGTCAGTTACCTCAAATTAATCCATTTTACTCTAGTGAATGCTCGGAGAATGATGGAAGCCACAAACCTACTGGAAGTGGAGTTGGAAGCAACAATGTCTGGCCTGAATTTGAGATCATCACTGGAGATGAAAGTGGATATAACAGAGACATATCCAAGGATAATGCCTTTTCTAATTCCTTGATCTCGGGGAATAGGATCGATGACACAATGAGTTCACTTTTGGATAGCTTTCAGGGTGATGATGACAAAAAGAGTTGGGGCTACTTCCAGGAACGCATTGCCAATGCCCCTGATCAAGTGTTGGGGTATTATAGGGAAACTAATGCTATGCCAATATGGCCTGTTTCAAATGGTTGGCCATCCAAAGCTGATATCCCTAAATGCAGTTATTGTGGTGGACCTATGAGTTGTGAATTTCAGATTATGCCACAACTGTTGTATTACTTTGGCGTTGACATTGAAGTGGACTCTTTGGATTGGGCTTCAATTGTTGTGTATACATGTGAAGCCTCTTGTGAGGTAGTTACCTTGCTGGCTATACCAGTGCAAAACTACTTATTTGGGATTGCCGGTGGAAAACTAATAGAAAGAATTTCACTGGCATTTAAAAAGGTTGTGCACCAAGAAATCAGTTGGTTGGATCATCCTTCAAATTCAAGTCGTAACCCTAGTACCCTGTGGTGGCTACACTGCCTCCACTCTCTCTCTGCGTTTTTCGTCTTCACAGCAGCTTCTGTTTTTCCTCAGTGTGGAGGCACAATGAGATTGGAGAAATGCTGGTTCTGTTCTTCTACCATATACCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCTAAGATTTTTAGATTTTGTAGAGCTAAATGCCACAAGAACTTTAAGATGAAGAGGAACCCTCGGAAAGTAAAATGGACCAAGGCATATAGGCGAGTCCATGGGAAGGATATGACTCAGGATTCAACCTTTGAGTTTGAGAGAAAGCGAAACAGGCCTGAGAGATATGACAGAAATCTTGCTGAGAATGTCCTCAAGGCCATTCCAAAGATTGAGAAGATCAGAGTTAGCAGAGCAGAGAGACACCACAAGAATAGGATGAAAGGCAAGAAGCAGACGGTGCATATGGAGGCAGTCAGGGTGTTGGAGCAGGGCATCAGTCTGGTCAAAGCTCCTTCTGTGCTTCGAGAGGATCCGTCTCTCACTTTACCAAAGATCAAAGTTGTGGTTTCTCAAAAACAAACAGAGGAAAATCTTCCCATGGAAGAGTGA 1437 0.4294 MDTPVNELEALRIDDDDDEVENVFFGFVEKSENQWDQHEQWKHHPERPSRSVKVFRCQLPQINPFYSSECSENDGSHKPTGSGVGSNNVWPEFEIITGDESGYNRDISKDNAFSNSLISGNRIDDTMSSLLDSFQGDDDKKSWGYFQERIANAPDQVLGYYRETNAMPIWPVSNGWPSKADIPKCSYCGGPMSCEFQIMPQLLYYFGVDIEVDSLDWASIVVYTCEASCEVVTLLAIPVQNYLFGIAGGKLIERISLAFKKVVHQEISWLDHPSNSSRNPSTLWWLHCLHSLSAFFVFTAASVFPQCGGTMRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRAKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIEKIRVSRAERHHKNRMKGKKQTVHMEAVRVLEQGISLVKAPSVLREDPSLTLPKIKVVVSQKQTEENLPMEE* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01050 478 CDD Ribosomal_L24e_L24 311 364 IPR000988 -
Rops3g01050 478 Pfam Ribosomal protein L24e 311 375 IPR000988 -
Rops3g01050 478 PANTHER 60S RIBOSOMAL PROTEIN L24 311 471 IPR000988 -
Rops3g01050 478 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 314 366 - -
Rops3g01050 478 SMART 4TRASH 316 354 IPR011017 -
Rops3g01050 478 ProSitePatterns Ribosomal protein L24e signature. 318 335 IPR023442 -
Rops3g01050 478 FunFam probable ribosome biogenesis protein RLP24 311 377 - -
Rops3g01050 478 Gene3D Ribosomal protein L24e 311 378 IPR038630 -
Rops3g01050 478 Pfam Programmed cell death protein 2, C-terminal putative domain 142 230 IPR007320 GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01050 Rops-Chr3 13929458 13938585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01050 311 478 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 66.071 1.51e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01050 K02896 - gmx:100793564 316.62