Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01046 ATGTCTACCTCGAAGAACCACCGTAACGGCCAGAACGAGACTCACCGGCTGGGGAGGATAACTGAGAGATCATCGTCTTTTTACGGTCACAACTCGGCGTCGGCGGCTACCATGTTACGGCGGCCGAAGACAGTGCCGGACCTTTTGTCGGAGAGGAAGCGTGCGGGGATGACGACGAAGACGGTGGCGGAGGTTACGCTGAGACAGCCGCCGAAGTTGCTGCTGAAGGTGACGATGATGAGAAGCCTAGGACCCGTGCAGTTGGTGATGACGCCGGAATCGACGGTCGGAGATTTGGTGGCGGCGGCGGTGCGGCAATACGTGAAGGAAGGTCGCCGCCCTATCTTGCCGTCCAACGACCCCTCCCACTTCGACCTCCATTATTCCCAGTTCAGCTTGGAAAGTTTGGATAGGGAGGAGAAGCTGATGGAACTTGGATCTAGAAATTTTTTTCAATGCCCGAAAAGGTGTACCAGCACCGTGGAAAGTGGTGCTGGCATGGACGGTAGTGCAACGACGCCGTTTGCTTCATGTTCCAGCGAGGCTGAGAGAGCAAGCAAAGGTGGTGGTGGTGGTGGTGGTGGGTTTGGTTGGTTGAGTGTCGTTAGCTCTGCCTCTCTTCCCTTTTGCCTATCTCGCTGTTCCTTTCAAATGGAAACACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTGGGGCAGTCTGTTAAAGTAGACCCATTGGATGAATTTCCTGGATACATTCACATCTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGACAACAAAGCAAGTCAACCTGTGGTTCTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTTACTAGGGATGACATCCCTCAACTATCCATGGATTTGGTTCTGGATAAAGAGTCTGAGCTTTCCCACAATTCAAAAACTGCTAGTGTCTATTTTTGTGGATACAAAGTTATCACTGAGGATGGCGATGTTTCTGACTTTTCTGATAGTGATGATGATCTTGCGTTGAATGAGCAAGATAATGGAAAACCTGAAACAAAAGCTGAAGATGTGAAGGTTCCTAAAAAAGATAGAAAACCTATTGACGTGTTTAGTGGATTGGTGAAACTGAAGAATGATAAAGAGGATGAATCTGATGACGAGTCTGCTGATGAAGATGAATTGGGAAGTTCTGATGAGATGGATGCTGATAGTGATAGTGATGAGGAGAGTGAAAGTGATGAAGAGACCCCTGTTAAGAAGGTGGAGCAGGGCAAGAAGAGAGCCAATGAGTCTGCATCAAAAACTCCAGTTCCCACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGAAAGAAAGGTGGACATACAGCAACTCCTCACCCTATGAAGAAGGGTGGAAAAACTCCCAACAGTGCTGCAAAGGACCGGACTCCTAATTCTGGTGGACTATCTTGCAAAAGTTGTAACAAGTCTTTCAACTCTGAAAGTGGCATGAAACAACATAAAAAGTCTAAGCATGGTGGTCAGTGA 1524 0.4777 MSTSKNHRNGQNETHRLGRITERSSSFYGHNSASAATMLRRPKTVPDLLSERKRAGMTTKTVAEVTLRQPPKLLLKVTMMRSLGPVQLVMTPESTVGDLVAAAVRQYVKEGRRPILPSNDPSHFDLHYSQFSLESLDREEKLMELGSRNFFQCPKRCTSTVESGAGMDGSATTPFASCSSEAERASKGGGGGGGGFGWLSVVSSASLPFCLSRCSFQMETPMEFWGVEVKVGQSVKVDPLDEFPGYIHISQVALGEAKKDNKASQPVVLYLKVDDQKFVLGTLTRDDIPQLSMDLVLDKESELSHNSKTASVYFCGYKVITEDGDVSDFSDSDDDLALNEQDNGKPETKAEDVKVPKKDRKPIDVFSGLVKLKNDKEDESDDESADEDELGSSDEMDADSDSDEESESDEETPVKKVEQGKKRANESASKTPVPTKKAKNATPEKTDGKKGGHTATPHPMKKGGKTPNSAAKDRTPNSGGLSCKSCNKSFNSESGMKQHKKSKHGGQ* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01046 507 Pfam Zinc-finger of C2H2 type 482 503 - -
Rops3g01046 507 MobiDBLite consensus disorder prediction 470 493 - -
Rops3g01046 507 MobiDBLite consensus disorder prediction 331 507 - -
Rops3g01046 507 MobiDBLite consensus disorder prediction 1 27 - -
Rops3g01046 507 MobiDBLite consensus disorder prediction 338 378 - -
Rops3g01046 507 PANTHER BNAC05G50380D PROTEIN 16 181 IPR040358 -
Rops3g01046 507 ProSitePatterns Zinc finger C2H2 type domain signature. 483 504 IPR013087 -
Rops3g01046 507 Gene3D Nucleoplasmin core domain 219 325 - -
Rops3g01046 507 SMART c2h2final6 481 504 IPR013087 -
Rops3g01046 507 MobiDBLite consensus disorder prediction 440 454 - -
Rops3g01046 507 FunFam Histone deacetylase HDT1 222 323 - -
Rops3g01046 507 SUPERFAMILY beta-beta-alpha zinc fingers 475 503 IPR036236 -
Rops3g01046 507 MobiDBLite consensus disorder prediction 409 425 - -
Rops3g01046 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 481 507 IPR013087 -
Rops3g01046 507 Pfam Nucleoplasmin-like domain 224 318 IPR041232 -
Rops3g01046 507 MobiDBLite consensus disorder prediction 379 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01046 Rops-Chr3 13784264 13787202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01046 222 504 C2H2 Transcription Factor Family AT5G03740 38.264 1.98e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01046 NPL 3.3e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01046 - - gmx:547649 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00587 7 7498293 7498984 Rops3g01046 3 13784264 13787202 PCT