Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01041 ATGGAGGACCTTAACCAAAACCTTAATGTCACTCAATCTCCCAGCTCCACTCAGAATGAGCCACAAACCACCAAGGAGGAACTGGTACATGCCATTTCCGGCGAGAACACAGCCGCACCGGAAGCTGTCGGAGTTGACTCTACCTCGGACTCCGGCGCCGGAGCAAAGTCCGAGGCTGAAGGTTCGGGACAAGGTGTGAAGAGGGGAAGAGGGAGGCCTCGGAAGTACGAGGCTGCCGGGAATGAGTTGTCTCCGGTGCCGGTGTCGGTGGCAGCGCCGCCGGGGATTCTAGCTAACCCTTTAGAAAGTCCAGGGAAGAGAAGCAGGGGACGCCCTCGTGGTTCTGGAAAATTGCAGATTCTGGCTTCCATTGGTGGATATGTTGCAGAAACAGCTGGGGGAAGCTTCACACCTCATGTGCTCACTGTGGAAGCTGGGCAGGATGTGGTCGGCACCATATTAACATTTTTTCAGAGAGGCTCTCGTGCAGTTTGTGTACTTTCTGCTACTGGTCCTGTAGCATGTGTCGTTCTTCGCCAACCTGGTGTTGGTGCTGGTTTTTTGAGATATGAGGGTCGCTTTGAGATTTTATCTCTAACTGGATCATGCACCTACGCTATTGGCCCTGCTGGTACACATATTAAAAGTGGCATGTTGTGCGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGTGGAGAAGTAGAGAGCTCATTGATAGCGGCTAACCCTATTCAACTTGTTCTGGCCACTTTCAAGCAAAACATTAGTAATCTAATCATGAAAAGGAACTTATCTGGATCTTCTTCTACTGCTCCCAACATGCCACCTGGTAATCCAGATTCAAGAAGGGATCAGCTAAAAATTCCTAAGTTGATGATAGAAGGTGAGCAGAGTTGTCCTTCACCAACAGCAACAACTACTAATGGGGTAGCAGATAATGTCATTCCTGAAACAACTAATGGAGTGTCAGATAATGTCATTACTACTGATCAACATATGCAATCTGACCCTGTCAGTGGTATTGATCTTGATTGCCAGACCCTGCAGCCTGTCACAGACCAAACAACCTCTGCAGATGTTGATGCCAGTGTTCCTCAGACATAG 1107 0.4887 MEDLNQNLNVTQSPSSTQNEPQTTKEELVHAISGENTAAPEAVGVDSTSDSGAGAKSEAEGSGQGVKRGRGRPRKYEAAGNELSPVPVSVAAPPGILANPLESPGKRSRGRPRGSGKLQILASIGGYVAETAGGSFTPHVLTVEAGQDVVGTILTFFQRGSRAVCVLSATGPVACVVLRQPGVGAGFLRYEGRFEILSLTGSCTYAIGPAGTHIKSGMLCVSLAKPDGRVFGGEVESSLIAANPIQLVLATFKQNISNLIMKRNLSGSSSTAPNMPPGNPDSRRDQLKIPKLMIEGEQSCPSPTATTTNGVADNVIPETTNGVSDNVITTDQHMQSDPVSGIDLDCQTLQPVTDQTTSADVDASVPQT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01041 368 CDD DUF296 137 252 IPR005175 -
Rops3g01041 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 253 IPR005175 -
Rops3g01041 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 304 IPR039605 GO:0003680
Rops3g01041 368 MobiDBLite consensus disorder prediction 1 116 - -
Rops3g01041 368 MobiDBLite consensus disorder prediction 63 77 - -
Rops3g01041 368 ProSiteProfiles PPC domain profile profile. 133 274 IPR005175 -
Rops3g01041 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 254 - -
Rops3g01041 368 Gene3D - 138 267 - -
Rops3g01041 368 PRINTS AT-hook-like domain signature 104 115 IPR017956 GO:0003677
Rops3g01041 368 PRINTS AT-hook-like domain signature 67 77 IPR017956 GO:0003677
Rops3g01041 368 SMART AT_hook_2 106 118 IPR017956 GO:0003677
Rops3g01041 368 SMART AT_hook_2 67 79 IPR017956 GO:0003677
Rops3g01041 368 MobiDBLite consensus disorder prediction 1 30 - -
Rops3g01041 368 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01041 Rops-Chr3 13672073 13676486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01041 62 342 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 37.333 9.16e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01041 - - gsj:114378162 327.02