Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01040 ATGGAACCTCCGGTTGTAAGATCGAGAGGTCGTCCTAGGAAACGAAGAAAAGAGGACGAGAATGAAGGTCTTGAAGCGAAAAGACAAGCTGTGGGGACAAGATCGATAGCATTGGTTGGGCGATATGTGTTGAAAGAGTTTCCGAGAAATGGAGTTTTTCTCGGGAAAGTTGTGTATTACGAGTGTGGATTGTATAGAATCAATTACGAAGACGGTGATTTCGAGGATTTAGATAGCAGTGAGATTCGTCCGATACTTCTCAGTGATGGTGATTTTGATAAATTAGCAAAGAGGAGGGAAAAATTAGAGGAATTAGTGTTGAAGAATAGTGTGAAGGTTGAAGATGTGTCGAAGAAGGGTTCTTCTGACACGAATAAAGAGGAATCAGTGGTGGATGTGCCTGTTTCAAGTGAATTGAACGGTGGATTATTGTTTGAAAACGATGAGAAAGAAGACGATGAAGCAGATGCTGATTCTTCGAGTGAGGATTCTAAGTCTGATGCTGAGATACCACCTTTGCCACCTCCATTACAGTTGCCACCATCATCGGGAACTATTGGCGTGCCTGAGCAATGTGTCTCACACCTGTTTGCTGTTTATGGTTTCTTGAGATCATTCAGCACTCGCTTGTTTCTACTTCCCTTTACTTTGGATGACTTTGTTGGTTGTCTTAATTGCCAAGTTGCAAATACCTTGTTTGATGCCATTCATGTTTCCCTAATGCGGGCTTTGAGGCGTCATCTTGAAGCCCTCTCGTCTGAGGGCTTTGAGCTTGCATCACAATGCCTTAGGTGCAATGATTGGGGCTTGCTCGATACATTGACTTGGTCTGTTTTTGTCATTCAGTATTTAGTAGTCAATGGATACACAAAAGGAGCTGAATGGAAAGGATTTTATGACGAGGTTTTTAATGGCGAGTATTATTTATTGCCTGTAAATAGAAAGTTAATGATATTGCAAATTCTTTGTGATGATGTTTTGGATTCCGAGGAGCTAAAAGCTGAAATGAACGTGCGTAAGGAAGCAGAGGTTGGGATCGATTATGATACAGAAGATGTCCTTCCTGCAGAAACTGGGTCTAGAAAAGTCCATCCAAGATATGCCAAGACTTCTTTTTTTGACGATAAGGAGGCTATGAAATTTGCTTCAGCATCAACTGCTGTGAACCAACCTGGTAACTCTATTTCATATTTCAGACATACAGAAAGCATCGAGGATGGTGATGTTGATAGTAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGGGTGATGAAAATGTTTATACCAGATGGGCCATGGTATTGTCCTGAGTGCAAAATTAATATGACTGGGCTAACAATTGCAAAGGGAACATCTCTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTACGGGCAACTCTTCATGGGTGCTTGCGACCACTTACTTGTGCTCAATATTGACCATGATGAATTTTGTCTCAAATATTACAATCTCAATGACATTCCTAAAGTTATCCAAGTGCTTTATGAATCTGTGCAGCATAGACCAATATATCATAGTATTTGTATGGCGGTGTTACAATATTGGAATCTTATGGAAAATTTCTTGCCTCTTCCTGTTTCAAGGGGAACAAATGTAAACTCAGCAAATATAAAGGAAGAGACAAAATTCTCTACTTCATTACTCCCTCCTCTGAGTGAAGACAACCATAAACCTGTTAGTTTGATGAAGGGAGAATACCCTCCAACTGCAGTAAGTTTGATTCACAGTGATAATATGGTGCGATGTCTTGATGCTTCATCAGTTATCATTCAAAGTCCTGCTCCTGAAAGCAGTAGTAATGGTAGCAGTAAAGAGTGCCCTACTGTGAATATGAAGCTTCCTGAGGTAACTGGGATGGAGTCGGTCATTTCAGCTGGTTCTTTTTCTGTTATTCATCAGTCTGACATGAACTATCAAAATTCTGTCAATGTGTCAACTGCAGTAGATCCAGCTAAGTGCTCTTTGGTAAACAACCGATTTAGTAATTATGGTCATGCAAATGATATGGGGTTGCCTATGAATTTTTCTTTGCAAACCAAAGAAAGCACCCCTGTAGGTTCTGTGAAGTGTGAGCGCAATGTAACCAATGATTTTGGATACATGGGTTTCTCCTATAAACCTCTGTCATACATAAATTACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCATTCTTTCTTCAGAGGAATCAAGGTCAGAGGGTCATGTGTCTGACAATCTGAGGAAAACCGCATCTGCAAACACTTATTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCTAGTTCTGAAAAGAAGCTCGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCTAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAAAGTGCTATGAAAATCCTTGCTGGCTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGTATTGCAACTTACATTATCTACATGGAGGAATGTTTACGTGGTTTAATAGTTGGGCCCTTCCTAAGTGCTGGCTACAGAAAGCAGTGGCGTAAGCAAATGGAACAGGCCACAACATTTAGTGCCATCAAGCCACTTTTACTTACTCTTGAAGAGAACATTCGAATCATTGCTTTTTGTGGGGACTGGATTAAGCTGGTAGATGATTGGTTGGTTGAATTTTCCACAATTCAAAGTGCCACATCTACTCTTGGAACAACTCAGAAACGTGCACCTAGTGGGAGGCGTTACAAGAAGCGGTCATCTATTGATGAAGCTACATCTGATGGTTGCCATGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTTACCAAATTTATGTTCCAGAAAGCAGCATTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTTAAGGAAAATTCCTGGTATTTTCTATGCTGATGGTTCTGAAATCCCTAAAAGAAGCAGACAACTTGTTTGGAGAGTTGCAGCTCAAATGAGTAGGAATGCATCACAGTTAGCACTTCAGGTCAGATATCTAGATTTTTACCTCAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAACAAACTTGTAGAGGGAAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTTCTCGGGTGATGAAAAATGTTGTTGAAATAGAGCAAGGTCCACAAGGAAAGGAAAAGTTTTGGTTTTCTGAAACACGCATTCCTTTATATTTGGTAAAAGAGTATGAGGAAGCTAATGAAAAAGTTCCATGTGATGAAGAGCAGTCTAACAATGCATTTCTTTTGCATAGAAGGCGGTTAAAAGGTACCTGCAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAACTTGGACATGTTCTCATGTTGTGTGTGTCAGATGGGTGTTTCAATTCGGAATGCTCTCAAGTGTAATACCTGTCAAGGTTATTGTCATGAGGGCTGTTCCATAAGTTCACTCTCTACAAACGAGGAAGTTGAGTACTTGACAACATGCAAACAATGTAAATGTAACCATGCCAAGTTACTTGCTCCAAAAGAGACTAGTAATGAATCTCCAACCAGTCCCTTACTCTTACAAGGACGAGAAAATAGCTCTGGCACTGTTTTCAAGGAACCAAGGCATAAATATTATGATCAAGCACTGAAATCTGCCAGGACAAAGGCTAGTCATCCCAACATGAAACAAGTTAGTTCTGTGACAGTTTTGAAGGGACCAAGGCCTAAATGTTATGATCAAACGCCAACTTCTACCAGGACAAATAATGGAGTTGCTTCTGATTCCACTTTGGCAGCAAAAAACCGTCGCAAGAATTGTTCTTGGGGTCTTATATGGAAAAAGAAAAATGAAGAAGATACAGGCATTGATTTTAGAACCAACAACATACTTTTAAAGGGAGGATCGGGTGTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGATCTGATCTAATGTATGTTCTCTGTGAGCATTGCGAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAGGAATCCAAAATTTCTAGTTTGTTTGGCTTCAAATGTTGCAAGTGTCGTAGGATAAAATCACCTGTATGTCCTTACTCTGATTTGAAGCTCAAGATACAAAAGGGTAAGAAATCACACACAAGGGCTTTGAAGAAAGAACATTCTGGAGCAGATTCTGATTCCGGAACATTTTCTGATATGAAAGAGTGTGAACCCACAACTCCTGTCTTTCCTGTGGAGGATGATCCTTTACTTTTCTCTCTTTCAAGTGTTGAGCTGATTACAGAACCTAAGTTAGATGTGGATGTTGAGTGGAACACTGTCTCTGGGCCTGGACTTCAGAAACTACCGGTGAGAAGGCATGTTAAGCATGAGGGGGATGGTGATGGTTCTTTTGGTGGTAGACCTTTACATACTGAATTCTCAACTCACAGCGAAGCAGGTAATCTGTCCAAGCCTTCAGATTTGTTATCACCTTTAGAATATGACTCTGCCGTGCACTATGACAGCAATCTACTGAACAACTCTGAAAGTGTAAATTATGAATACACGGAGTTTGAACCCCATACCTACTTCTCTGTAACGGAACTGCTGCACCCAGATGATGGCAGCCACTTTGAGGGAGTTGATGCATCTGGGGAATTGTCAGGATATTTGGAAAATTCTGGTACCCTTGTCCCTGAAGAGTGTGGTGGTGTTAGTTCAGTCATTAAGTCAGAACCTGCATTTTCCTTAGAAGATAGCCACTTTGAGGGAATTGATGTGTCTGGGGAGTTATCAGGATATTTGGAAAATTCTGGTACCCTTATTCCTGAAGAGTATTTAGGTGTTAGTTCAGTCAAGTCAGAACCTGCAATTTCCTTTGAAGATAGCATTTATAGTTGTTGGAAATGTTCTCAAATGGAACCAGCCCCTGATCTCTGTTGTGAGATTTGTGGGATTTTGATTCACAGCCACTGTTCACCTTGGCTTGAATTACCATCTGGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGAATTGCAATAG 5229 0.4116 MEPPVVRSRGRPRKRRKEDENEGLEAKRQAVGTRSIALVGRYVLKEFPRNGVFLGKVVYYECGLYRINYEDGDFEDLDSSEIRPILLSDGDFDKLAKRREKLEELVLKNSVKVEDVSKKGSSDTNKEESVVDVPVSSELNGGLLFENDEKEDDEADADSSSEDSKSDAEIPPLPPPLQLPPSSGTIGVPEQCVSHLFAVYGFLRSFSTRLFLLPFTLDDFVGCLNCQVANTLFDAIHVSLMRALRRHLEALSSEGFELASQCLRCNDWGLLDTLTWSVFVIQYLVVNGYTKGAEWKGFYDEVFNGEYYLLPVNRKLMILQILCDDVLDSEELKAEMNVRKEAEVGIDYDTEDVLPAETGSRKVHPRYAKTSFFDDKEAMKFASASTAVNQPGNSISYFRHTESIEDGDVDSNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPDGPWYCPECKINMTGLTIAKGTSLRGAEIFGKDLYGQLFMGACDHLLVLNIDHDEFCLKYYNLNDIPKVIQVLYESVQHRPIYHSICMAVLQYWNLMENFLPLPVSRGTNVNSANIKEETKFSTSLLPPLSEDNHKPVSLMKGEYPPTAVSLIHSDNMVRCLDASSVIIQSPAPESSSNGSSKECPTVNMKLPEVTGMESVISAGSFSVIHQSDMNYQNSVNVSTAVDPAKCSLVNNRFSNYGHANDMGLPMNFSLQTKESTPVGSVKCERNVTNDFGYMGFSYKPLSYINYYMHGDFAASAAAKFAILSSEESRSEGHVSDNLRKTASANTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAALSATKSAMKILAGFSPIRSGEGILPSIATYIIYMEECLRGLIVGPFLSAGYRKQWRKQMEQATTFSAIKPLLLTLEENIRIIAFCGDWIKLVDDWLVEFSTIQSATSTLGTTQKRAPSGRRYKKRSSIDEATSDGCHENFVWWRGGKFTKFMFQKAALPKSMVRKAARQGGLRKIPGIFYADGSEIPKRSRQLVWRVAAQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSCYGIAFGSQKHLPSRVMKNVVEIEQGPQGKEKFWFSETRIPLYLVKEYEEANEKVPCDEEQSNNAFLLHRRRLKGTCKDIFFYLTCKRDNLDMFSCCVCQMGVSIRNALKCNTCQGYCHEGCSISSLSTNEEVEYLTTCKQCKCNHAKLLAPKETSNESPTSPLLLQGRENSSGTVFKEPRHKYYDQALKSARTKASHPNMKQVSSVTVLKGPRPKCYDQTPTSTRTNNGVASDSTLAAKNRRKNCSWGLIWKKKNEEDTGIDFRTNNILLKGGSGVPQLEPVCHLCRKPYRSDLMYVLCEHCENWYHAEAVELEESKISSLFGFKCCKCRRIKSPVCPYSDLKLKIQKGKKSHTRALKKEHSGADSDSGTFSDMKECEPTTPVFPVEDDPLLFSLSSVELITEPKLDVDVEWNTVSGPGLQKLPVRRHVKHEGDGDGSFGGRPLHTEFSTHSEAGNLSKPSDLLSPLEYDSAVHYDSNLLNNSESVNYEYTEFEPHTYFSVTELLHPDDGSHFEGVDASGELSGYLENSGTLVPEECGGVSSVIKSEPAFSLEDSHFEGIDVSGELSGYLENSGTLIPEEYLGVSSVKSEPAISFEDSIYSCWKCSQMEPAPDLCCEICGILIHSHCSPWLELPSGLGSWRCGNCRELQ* 1743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01040 1742 Pfam PHD-finger 416 458 IPR019787 -
Rops3g01040 1742 SUPERFAMILY FYVE/PHD zinc finger 1371 1429 IPR011011 -
Rops3g01040 1742 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 294 337 IPR028942 -
Rops3g01040 1742 MobiDBLite consensus disorder prediction 1446 1465 - -
Rops3g01040 1742 CDD Tudor_AtPTM-like 39 87 IPR047365 -
Rops3g01040 1742 SUPERFAMILY FYVE/PHD zinc finger 392 459 IPR011011 -
Rops3g01040 1742 MobiDBLite consensus disorder prediction 144 184 - -
Rops3g01040 1742 SUPERFAMILY FYVE/PHD zinc finger 1681 1739 IPR011011 -
Rops3g01040 1742 SMART testlast3 190 250 IPR018501 -
Rops3g01040 1742 SMART PHD_3 415 458 IPR001965 -
Rops3g01040 1742 SMART PHD_3 1694 1739 IPR001965 -
Rops3g01040 1742 SMART PHD_3 1375 1423 IPR001965 -
Rops3g01040 1742 SMART PHD_3 1187 1235 IPR001965 -
Rops3g01040 1742 MobiDBLite consensus disorder prediction 1 26 - -
Rops3g01040 1742 Pfam DDT domain 191 247 IPR018501 -
Rops3g01040 1742 ProSitePatterns Zinc finger PHD-type signature. 416 457 IPR019786 -
Rops3g01040 1742 ProSiteProfiles DDT domain profile. 190 250 IPR018501 -
Rops3g01040 1742 ProSiteProfiles Zinc finger PHD-type profile. 413 460 IPR019787 -
Rops3g01040 1742 PANTHER PHD FINGER FAMILY PROTEIN 34 1705 - -
Rops3g01040 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 462 IPR013083 -
Rops3g01040 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1365 1436 IPR013083 -
Rops3g01040 1742 CDD PHD2_CHD_II 416 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01040 Rops-Chr3 13613045 13628583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01040 280 544 EF-hand Containing Proteins AT5G22760 51.111 3.12e-77 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Rops3g01040 DDT 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01040 - - lang:109351702 2386.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00596 7 7642915 7650522 Rops3g01040 3 13613045 13628583 PCT