Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01032 ATGTCTCGCCGCGGCGGTGGTCGACAATCTGAGTTTCGCCGGGATCAATCATCTCCGTCGCAACCTACTCCTTACGAAGCTTCTGGAAGAGGCCGAGGCCGAGGCCGTGGTGGACGCGGTCGGACTCACGTTCCTGCCGAGTCGCCGCCTCCATCGTCGGCTCGTGCTCCTCCTCCATCCTCGGCGTATGCTCCTCAGGCACCGGCAATCGGTACTGGTCGCGGTGGGATCCACCTTCCGGCATCTGCGCGGCCGCCGTCTTCATCGTCGACGTATGCTCCTCCTCCGGTGCCGGAGATCGGTTCTTCGTCCGCTGCAGCACCTGTTGCTGCCTCAAGTTCTTCATCCCCCCCGCCGGCTTCTCTTTCGGCGGAATCTCTGAGTTCCGAGGTGGAGGAGAAGCTAGCATTGCAGTCTCCGGCGCCGTCGTCGTCAAAGGCTTTCAGGTTCCCTGACCGGCCTGGCTACGGTAGATTGGGAAGGAAAATCCAAGTTCGTGCCAATCATTTTCAGTTGGAAGTCGCTGACCGTGATTTACATCACTACGATGTTTCAATCACTCCTGAGGTTGTTTCAAAGAAGGTTTGTAGAGATGTGATGAATCAGTTAGTCCGACTGTATCAAGAGAAACACTTGGGTAGGCGCCTTCCTGCTTATGATGGACGGAAAAGTCTTTTTACGGCAGGTCCATTGCCGTTTACGTCGCAGGATTTTGCGGTCAAGTTGGATGATGATGAAGGAGCCTCGCCTTCTGGTTCTTCTAGGAGAAGACGTGAACGCGAGTTCAAGGTCACTATACGTTTCGCTGCAAAGACCGACCTTCATCATCTTCGTCAGTTTCTCAACCGTTTACAGCTGGACTGCCCACAGGAAACCATACAAGCTCTCGATGTTGTTTTGAGGGCAACACCGTCTGAAAAGTATAATGTAGTGGGGAGGTCATTTTTCTCACCCAATTTGGGGGGAAGAGGTCCACTTGGACAAACTGGTATAGAATATTGGAAAGGCTATTATCAAAGCCTTCGCCCAACCCAGCTGGGACTTTCGCTAAATATTGATGTGTCAGCGAGGGCATTCTATGAACCGATTAATGTGATTGAGTTTATTGATAAACATTTTCGTTTGAATTTTTCAAGGCCTCTGTCTGATCAAGATCGTGTCAAGGTTAAGAAAGCTTTGAGAGGTATAAAGGTGGAACTAACTCACGGCAGGGATATCAGAAGATACAAGGTTACTGGAGTCACGAAAGAACCACTCAGAGAGTTAATGTTTACTCTTGATGACAAGACAACGAAAAAATCGGTTGATCAATATTTTCGTGAGAAATACGATATTGTGTTACAGTATTCGGGTCTTCCTGCTCTCCAAGCTGGAAGTGACACAAAACCTATTTATTTGCCTATGGAGCTTTGTCAGATTGCACCTGGACAGAGGTACACGAAGAGACTGAATGAGGAGCAAGTAACTGCTCTTTTGAAGGCAACCTGTCAGCGTCCTGAGATAAGGGAAAACTATATTAGAGAGATCATGGAGAAGCACAGTTTCAACACAGACAAGTTTGTGCGTGAGTTTGGGATTAATGTAAAGAAGGATCTTGCTACGGTTAATGCTCGTCTTTTGCCTCCCCCAACGCTTAAATATCATGAAACGGGAAGAGAATCAAGAGTTGACCCGCGGATGGGTCAATGGAATATGATTAATAAGAAAATGGTTGATGGTGGCAATGTCGAATATTGGACTTGCCTCTGTTTTTCAACAAAAGTGAACAGAGATTTGCCTGCTGAATTTTGTTGGGAATTGGGCAGTATGTGTACCAGCAAGGGAATGTCTTTCAGCCAAGAGCCTTTAATACCTATAACTCAAGCTCGGCCTAGTGAAATAGAAAGCGCTCTGAAGGATGTTCATAAACGGTGTACAGCTAGACTTAAAAGCATGAATGCGAATAAAAGACTCCAATTGTTGATAATAATTTTGCCTGATTTTAAAGGGTCTTATGGAAAAATCAAGCGTATATGTGAAACAGAATTAGGAATAGTGTCTCAGTGCTGTCAGCCGAGACAAGCTTCAAGGTTGAATAAGCAGTATCTTGAAAATGTGGCCCTCAAGATAAATGTTAAGGTTGGTGGTCGAAACACGGTGTTGATTGATGCAATTGAGAGAAGAATCCCTCATGTGACTGATGTACCAACAATTATCTTTGGTGCGGATGTAACACATCCACAACCAGGGGAAGACTCAAGTCCTTCTATAGCTGCAGTAGTGGCATCCATGGATTGGCCTTGGGTCACAAAGTACAGGGGAGTTGTTTCTGCCCAGCCTCACCGTGAAGAAATTATTCAAGATCTTTATAAAAAACATGAAGATCCGAAATCGGGAATTGTGCATGGTGGAATTGTTAGGGAGTTAATTCGAGCTTTCTATAAATCCACTGGGCAGAAGCCTCGCAGGATTATCTTTTACAGAGATGGAGTGAGTGAGGGGCAATTTAGTCAGGTTTTGCTTTATGAGATGGATGCAATAAGAAAGGCTTGTATCTCATTAGAGGAGGGGTATCTACCCCCAGTTACCTTTGTGGTGGTACAGAAAAGACATCACACTCGTCTCTTTCCTTTTGATCATAGAAGCCGTGATCAGTCGGATAGAAGTGGAAATATAATGCCAGGGACTGTTGTGGACAGAGACATTTGCCACCCTCGGGAATTTGACTTTTATCTCAACAGTCATGCTGGAATTCAAGGAACTAGTCGTCCAACTCATTATCATGTTTTGTTTGATGAAAATAACTTCACCGCCGACGAACTGCAATCGTTGACAAATAATTTATGTTACACATATGCGAGGTGTACTAAATCAGTTTCAATAGTTCCTCCTGCATACTATGCACACTTGGCAGCTTTTCGAGCTCGCTACTATATTGAAGGTGAAACATCGGAAGTTGGTTCTGCAAGTGGAAATAGGAGGACTGTGACATTGCCCTCAATCATGGAGAATGTCAGAGATGTTATGTTTTACTGTTGA 3018 0.4556 MSRRGGGRQSEFRRDQSSPSQPTPYEASGRGRGRGRGGRGRTHVPAESPPPSSARAPPPSSAYAPQAPAIGTGRGGIHLPASARPPSSSSTYAPPPVPEIGSSSAAAPVAASSSSSPPPASLSAESLSSEVEEKLALQSPAPSSSKAFRFPDRPGYGRLGRKIQVRANHFQLEVADRDLHHYDVSITPEVVSKKVCRDVMNQLVRLYQEKHLGRRLPAYDGRKSLFTAGPLPFTSQDFAVKLDDDEGASPSGSSRRRREREFKVTIRFAAKTDLHHLRQFLNRLQLDCPQETIQALDVVLRATPSEKYNVVGRSFFSPNLGGRGPLGQTGIEYWKGYYQSLRPTQLGLSLNIDVSARAFYEPINVIEFIDKHFRLNFSRPLSDQDRVKVKKALRGIKVELTHGRDIRRYKVTGVTKEPLRELMFTLDDKTTKKSVDQYFREKYDIVLQYSGLPALQAGSDTKPIYLPMELCQIAPGQRYTKRLNEEQVTALLKATCQRPEIRENYIREIMEKHSFNTDKFVREFGINVKKDLATVNARLLPPPTLKYHETGRESRVDPRMGQWNMINKKMVDGGNVEYWTCLCFSTKVNRDLPAEFCWELGSMCTSKGMSFSQEPLIPITQARPSEIESALKDVHKRCTARLKSMNANKRLQLLIIILPDFKGSYGKIKRICETELGIVSQCCQPRQASRLNKQYLENVALKINVKVGGRNTVLIDAIERRIPHVTDVPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGVVSAQPHREEIIQDLYKKHEDPKSGIVHGGIVRELIRAFYKSTGQKPRRIIFYRDGVSEGQFSQVLLYEMDAIRKACISLEEGYLPPVTFVVVQKRHHTRLFPFDHRSRDQSDRSGNIMPGTVVDRDICHPREFDFYLNSHAGIQGTSRPTHYHVLFDENNFTADELQSLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYIEGETSEVGSASGNRRTVTLPSIMENVRDVMFYC* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01032 1005 CDD Piwi_ago-like 519 972 IPR045246 -
Rops3g01032 1005 Pfam Mid domain of argonaute 558 636 IPR032473 -
Rops3g01032 1005 SUPERFAMILY Ribonuclease H-like 647 973 IPR012337 -
Rops3g01032 1005 CDD PAZ_argonaute_like 362 474 - -
Rops3g01032 1005 SUPERFAMILY PAZ domain 358 514 IPR036085 GO:0005515
Rops3g01032 1005 MobiDBLite consensus disorder prediction 106 128 - -
Rops3g01032 1005 Pfam PAZ domain 388 491 IPR003100 GO:0005515
Rops3g01032 1005 Pfam Piwi domain 655 972 IPR003165 GO:0003676
Rops3g01032 1005 Pfam Argonaute linker 1 domain 311 361 IPR014811 -
Rops3g01032 1005 SMART PAZ_2_a_3 368 500 IPR003100 GO:0005515
Rops3g01032 1005 Pfam Argonaute linker 2 domain 502 547 IPR032472 -
Rops3g01032 1005 ProSiteProfiles Piwi domain profile. 653 973 IPR003165 GO:0003676
Rops3g01032 1005 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 142 974 - -
Rops3g01032 1005 MobiDBLite consensus disorder prediction 50 64 - -
Rops3g01032 1005 Gene3D paz domain 357 479 - -
Rops3g01032 1005 ProSiteProfiles PAZ domain profile. 363 475 IPR003100 GO:0005515
Rops3g01032 1005 Gene3D - 539 715 - -
Rops3g01032 1005 Gene3D - 721 1005 IPR036397 GO:0003676
Rops3g01032 1005 SMART DUF1785_2 309 362 IPR014811 -
Rops3g01032 1005 MobiDBLite consensus disorder prediction 1 153 - -
Rops3g01032 1005 FunFam Argonaute 10 539 715 - -
Rops3g01032 1005 FunFam protein argonaute 10-like 721 1005 - -
Rops3g01032 1005 Pfam N-terminal domain of argonaute 161 300 IPR032474 -
Rops3g01032 1005 SMART Piwi_a_2 653 973 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01032 Rops-Chr3 13398809 13404698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01032 97 1005 Eukaryotic Initiation Factors Gene Family AT1G48410 58.686 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01032 K11593 - gmx:100799033 1314.67