Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01025 ATGGAATTCTACAACCGGAAACTGCTTCTAGTGAACGAGGACGCGCCAATCTCCTCGGCCTTAACCCGTCTCCCTCACATCCAAGACACCGAACCCACCGCCACTACGCCGGAATCAACGACGTCGTTTAAAAGGTCTTTGCAATTCCCACAGCGTCCGGTTTTGAATTCCAACGTCGTTTACACCTTTGTCATCCTCTTCACAGCTCTCTTCTTCTTTGCCTTCATCCTACTGTCTATCCGTCGATTCTCATTTTTCCTTCGCCGCCGTCAGGAGGAGGATCTCGCCGCCGCCGGGAAGTCACTGCCGGTGAGTTCGTACAGCGGAGAAACGAAGCAAGTGGAGTGTGTGATATGTTTGGAGGAGTTTCGAGATGGTGACATGGTGAAGATGCTTCCGTATTGTAGGCACGTGTTTCACCCTAAATGTATTGACACGTGGCTCTCTTCGCACGTGACTTGTCCTGTTTGCCGGTGTAGTAAACCGTGCGGTGAGATCAGGGATGTGGGAGGATCAACGGTGGAGATTGGAGGAGAAGGTGGAGAGGTGGGGGAGGAGAATTAG 564 0.5213 MEFYNRKLLLVNEDAPISSALTRLPHIQDTEPTATTPESTTSFKRSLQFPQRPVLNSNVVYTFVILFTALFFFAFILLSIRRFSFFLRRRQEEDLAAAGKSLPVSSYSGETKQVECVICLEEFRDGDMVKMLPYCRHVFHPKCIDTWLSSHVTCPVCRCSKPCGEIRDVGGSTVEIGGEGGEVGEEN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01025 187 SMART ring_2 116 157 IPR001841 -
Rops3g01025 187 PANTHER RING FINGER DOMAIN-CONTAINING 38 160 - -
Rops3g01025 187 Pfam Ring finger domain 115 158 IPR001841 -
Rops3g01025 187 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Rops3g01025 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 164 IPR013083 -
Rops3g01025 187 CDD RING-H2_EL5-like 115 158 - -
Rops3g01025 187 SUPERFAMILY RING/U-box 115 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01025 Rops-Chr3 13257230 13257793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01025 54 161 C3H Transcription Factor Family AT2G27940 34.722 1.26e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01025 - - mtr:25492360 150.214