Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01022 ATGGCTATTGCTGGTCTGCGCAGTGTGTCTGTGCTCGACTCTTCTTTCCTGAGGGACTCCCATTCTCAGTCATCCAGGAGAGGGGACGATGGAAGAAGGGCAAGCACCCGGTCATCTTCAATATTGCAAATGTGGAGAGAGATTGAGGATGAACATGTGGTGAATCAAGTTCATGGAAGACCTGGTGAAGTACTACTTGAACAAGGAGGGGATAGGTCGAATGTGGACCTATTATCAGAAGATACACACGATAATAGCCGAGGGGTAGGAGAGGGGCATATTCTAGACGATGAAGTTTTGGGTGAGAATGAGTCTGAAACATGGTCACAGCCACAAAGTCAGAATGAATCTCATGATGATCATGAGGATTTAAACAATTCTAGCTGTGAAAACTCTTCTGACATGGGAGAAGTTGAAAGAGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAACAGTGGTGCTAAGGATCATGGATCAAATGTTTCCCGAAGAAACAACAGTTCAAGGGGAGAATGGCTTGGAGAAACAGAGCAGGAAAGGGTGAGAATTATAAGGGAGTGGGTACAAATGAGTAGTCAGCAGAGAAGTGTTTCTTCTGGGGAAAATAGGGAAGAACCATCTGCTGGAATTGATACACAAATTGAACGTGTACGTGATGGATTTGTTGTTAACCAGAGTGAGGGCCAAACTGAGCATCCACGGAGGGGTATCCGTAAATTATGTGGCAGACAGGTTATGCTTGATATGCTCAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAATTCAGGAGTTGTTGGGCCATCAGGCTGTATCTCAATTCCCCCATCGCAATCGCATACAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGGTCTGTTGATCAGAACAGGTCCACTTCTGTTGCGGAAAGTGAATTAGGCTTTTTGAGGCGAAGACAAACTGTATCAGGTCTAAGGGAAGGATTCTTCTCTAGAAAGGACAATACTGGTTGCAGTCAAGCAACCAGCAACATATCTGATACCTTGTCTAACATTGATGTTGATTTCAATACAAATGAGCAAACTGAAGCAAGCACTTCACATATGGTCCTAAGTGTACAGTCTGAACCTAATAATAGAGGAAGTAATGGGCTTGGAATATCAGGTGACCGGAACCGTTTACAAGGAACCACATGTGAGAATTTGGATCAGCAAGACTCTGCCGCTAATGCTGAAGATCAGTTGCAGTGTTCGCAAATTGAATCCGTAGATCGGCAATCGTCATTCAGTGTTGGGGTTGAAAGAAGAGATGACACTGGGCGAAATGTTGATGTGACGCCAACTGAAGATACATCTAGTGTACAGACCCAACAAAGCTTACAGATTGAAGCTTCAGAGCATAGCAATAATCAGGAATTCAGCGAGGTACATGATGAGCAATCTGAGCTTGGTGATATAAGTAATGGTGAAAACAATTTGTCAAATCACGACAATCATATGGAGGGAAATATTGTTGATGATGTTAATTGGATAGAATCTGGTGCTCCAGAAGGAGAACAGCCGGAAGAAGTTATTCAAAATGAAGGAAGTGGCTGGCATCAAAGTAACACTGAATGGAGAAATAGCACCGATGAAAGTGTGGAGGATAATCAGCTCAGTAATACAGCAAATGAGTGGCCTGAAAACATTTTGGCAAATGAGGATGGAGAAAACTCTCGTCTGCAAGAAGCTCCTGAAGTGTGGCAAGAAGATGGGGGATTCCAAGAGGCCGTGGAAAATTGGTTGGGAGGACCTTCTGATCATGAAAGTGCTCCAGGTGGTAGAGTTCATGGATTTTATTTTCCTGATGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGCGTCTCTAATCTCCTTCACAGTAGCTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCACATTGAGTGGGAGGAGCTGCAAGAAACAACCCCTGCTTCTGCCTCAGTAGAACAGGACCTTGAGCAGAGTAGTAGAGATCAGATTGTTGGTCAGGAGGGTACTATTAATAGTCCACTTGACTTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTCTGGGACCAGCACCCTCATCGTGACCGCTGGCCTCATAATGACGTAAATAATCAGCGTCTAGGAATTGATTGGGAGATTATTAACGACTTGAGAATTGACATGGCTAGATTACAGCAAAGGATGAATAATATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCAGCTGATTCATCAGGAATACATGACTGTGAGTCACCAGATGATAAATCTAAATGGGACTGTGTGAGAAAAGGACTTTGCTGTATTTGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCGCATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAGTGCCCTATGTGCCAAGCGCCTGTGGTGGAGGATTCTAACAAGTTTTATCTCCTGGACGTCTCCAGTTTCGATTTGCACCTTCTGTTCGATGTGGAGGATAGAGATCCCTAG 2634 0.4415 MAIAGLRSVSVLDSSFLRDSHSQSSRRGDDGRRASTRSSSILQMWREIEDEHVVNQVHGRPGEVLLEQGGDRSNVDLLSEDTHDNSRGVGEGHILDDEVLGENESETWSQPQSQNESHDDHEDLNNSSCENSSDMGEVERERVRQIFREWMNSGAKDHGSNVSRRNNSSRGEWLGETEQERVRIIREWVQMSSQQRSVSSGENREEPSAGIDTQIERVRDGFVVNQSEGQTEHPRRGIRKLCGRQVMLDMLKKAERERQREIQELLGHQAVSQFPHRNRIQALLRGRFLRNDRSVDQNRSTSVAESELGFLRRRQTVSGLREGFFSRKDNTGCSQATSNISDTLSNIDVDFNTNEQTEASTSHMVLSVQSEPNNRGSNGLGISGDRNRLQGTTCENLDQQDSAANAEDQLQCSQIESVDRQSSFSVGVERRDDTGRNVDVTPTEDTSSVQTQQSLQIEASEHSNNQEFSEVHDEQSELGDISNGENNLSNHDNHMEGNIVDDVNWIESGAPEGEQPEEVIQNEGSGWHQSNTEWRNSTDESVEDNQLSNTANEWPENILANEDGENSRLQEAPEVWQEDGGFQEAVENWLGGPSDHESAPGGRVHGFYFPDDDNVYSVELRELLNRRSVSNLLHSSFRESLDQLIQSYVERQGHAHIEWEELQETTPASASVEQDLEQSSRDQIVGQEGTINSPLDLPSLPIPPPLPLWDQHPHRDRWPHNDVNNQRLGIDWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSADSSGIHDCESPDDKSKWDCVRKGLCCICCESNIDSLLYRCGHLCACSKCANELLQSRRKCPMCQAPVVEDSNKFYLLDVSSFDLHLLFDVEDRDP* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01022 877 CDD mRING-HC-C3HC5_NEU1 807 851 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 522 552 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 440 464 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 17 38 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 192 207 - -
Rops3g01022 877 Coils Coil 735 762 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 514 552 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 151 176 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 74 100 - -
Rops3g01022 877 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 432 851 - -
Rops3g01022 877 Pfam Zinc finger, C3HC4 type (RING finger) 804 849 - -
Rops3g01022 877 ProSiteProfiles Zinc finger RING-type profile. 807 846 IPR001841 -
Rops3g01022 877 MobiDBLite consensus disorder prediction 59 139 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 425 439 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 192 218 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 465 479 - -
Rops3g01022 877 SUPERFAMILY RING/U-box 806 852 - -
Rops3g01022 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 864 IPR013083 -
Rops3g01022 877 Coils Coil 244 271 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 423 479 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 20 34 - -
Rops3g01022 877 MobiDBLite consensus disorder prediction 156 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01022 Rops-Chr3 13247203 13252642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01022 807 851 C3H Transcription Factor Family AT3G06140 44.444 4.20e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01022 - - gmx:100801329 1298.11