Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01021 ATGGCGAACGGTACGGATTCGGAGCAGTTTGTGGTGCTTTCTAAGGTGAGGACGGGTCTCAAGAGGGAGTTTGCCTTTGCCATGAAGGCTCAGTCTGAGATCTGTGGTGGGTCCCTCGGTCGAACCCGGTCCAACAAGAACCGGAATGTGGTCCAGGTTTTGAACCGAAAACGGTCCAGGAAATCTGGTTTGTTTGATAACAACCCCAACGGTTCAGTGAAGGAGATTGAGAAGGAGGAAGAGGATGTGGGTGATGTTATGAGTGAGGAGGAGGCAAAAAGTGGTGTGGTGGACCTTGAAGAACCCAAGAACCAAGTGGGTGAATCGTTGGGAAAGAGGGAAGATGAAGTTGAGGCTCCAAAGATTGAAACTGTGAATGAGGATGAACCTAAAAGTGGCAATGTTTTGGAGGGTTTGAAGGAAGAGGTGATGGATGAAAAGGTGGAACAACCCCTTTGTGAAAGTGGGGTCAAAGAGGGAGAAGGTACTACTGTCATAACAAATTTGGGTGGTGGTGATTGCAAGGTGAAGAAGGGTGTGTCTTCAGAGAAAATGCCAAGGAGGTTTACGAGGTCAGCATTGAAGAAAAATTTGGTTGATGAGAAGGTTGCAAATGATGAGGGTGATGCTAGTGTTGTAGCTGTTGAAAATGGTGATGATGTTAGGAAGGAAATTGAGGATACCCCAACTCAAGTTAAAATGTCCAAGAGTGCTTCTTCTAGCCAGAAGAAGTTCCCTTCGAAGTTGAAGGACCTTCTTGACTCGGGGATTCTCGAGGGACTACCTGTGAACTATGTCCGGGGCATGAAGGCACGAGGAGAAACAGGGCTTAGGGGAGTGATTAGAGGCAATGGGATTGTGTGCTATTGTGAGAGTTGTAATGGGGTTGAGGTTGTGACGCCCACTGTATTTGAGTTGCATGCTGGTAGTACAAACAAACGTCCCCCAGAGTATATTTGTCTTGAGAATGGGAATACTCTTCGGGATATCATGAATACATGTTTGAACATTCCATTAGACAATTTGGAGGAAGCTGTCCAAAAGGTCCTTGGAGGCTTCACCATGAAGAAATCTACCTTCTGTTTGAACTGCAGAGATGTCAGTGTTGTGTCAAGACTACTATGTAATTCATGCTGGGGGTTGAAAGACTGTCAACCTAGTCCTACTCGAACAACTGAGGCTAGCAATAGCCGTGTTTCACAAGCAGTTCCATGCAGATCCCCTGAACCGGTTGTGCTTCCAAAGTCATTAAACAACGGCATGAAACACAGTACATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGCTTGCATAAGTTGGTCTTTGAAGAAGATGTGTTGCCAGATGGAACTGAAGTAGCATACTATGCTCGTGGAAAGCAACAATTGGTTGGTTACAAAAAGGGATTTGGAATTTTTTGTAGCTGTTGTGACTGCGAGGTCAGCCCTTCTCAGTTTGAAGCACATGCTGGTTGGGCATCACGACGGAAGCCTTACCTGCACATATACACATCTAATGGAGTCTCACTCCATGAGTTGTCCATCTCTCTATCAAAAGACCGGAGGTTTTCTATCAATGATAATGATGACCTCTGCAGTATATGTCAAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCACGGACTTTTCACATTGATTGTGTTCCTCTTCCTTGGATACCAAGTGGTACCTGGTATTGTAAATATTGTCAGAATGTATTCCAGAAAGAACGATATGTAGAGCATAATGCAAATGCTGTGGCAGCTGGAAGGATTGCAGGCATTGATCCTCTAGAACAGATAAACCAGAGATGCATTCGTATTGTCAAAACTTACGAGGTTGACCATGGTGGATGTGCACTGTGCAGAGAACAAGATTTCAGCAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAGGAATATCACGTAGGGTGTTTGAAGGATCATAACATGCAGAGCCTGGAGGAATTACCTGAAGGGAATTGGTTCTGCTGCTCAGATTGCGATCAAATTCATACTGCTTTGCTAAATTTGGTGGCTCACAGGGAAGAGAATCTTCCAGATTCCCTCCTGAGTTTGATAAAAAAGAAACATGAAGAAAAAGGTTTAGGAACTGAGGCTGGTCTTGATATAAAATGGAGGGTTCTAAACTGGAAATTGGTTGCTTCTGATGAGACTAGGCAATTGCTTTCAAAGGCCGTTGCTATCTTCCATGAGCGGTTTGATCCAATAATTGATTCTACTTCACGCCTTGACTTCATTCCAACAATGCTTTATGGAAGGAACATCAGGGGTCAAGATTTTGGCGGAATGTACTGTGCAGTGCTCACTGTCAACCAAGTGGTTGTATCTGCTGGAATATTTCGTGTTTTTGGGCAAGAAGTGGCAGAGCTTCCCTTAGTAGCAACTAATAAAGATTGCCAAGGACAGGGTTACTTCCAGGCCTTGTTTTCATGCATCGAGGGGGTGCTTGGATCTTTAAAAGTGAAACACTTAGTCCTACCAGCTGCTGATGAAGCTGAATCTATATGGACCAGTAAATTTGGGTTTACAAAGCTAGACAAAGAAGAGATAAACAATTACAAGAGATGGTACCGCATGATGATATTTCAAGGGACCTCATTACTACAGAAGCCAGTTCCTGCGCTCTAA 2682 0.443 MANGTDSEQFVVLSKVRTGLKREFAFAMKAQSEICGGSLGRTRSNKNRNVVQVLNRKRSRKSGLFDNNPNGSVKEIEKEEEDVGDVMSEEEAKSGVVDLEEPKNQVGESLGKREDEVEAPKIETVNEDEPKSGNVLEGLKEEVMDEKVEQPLCESGVKEGEGTTVITNLGGGDCKVKKGVSSEKMPRRFTRSALKKNLVDEKVANDEGDASVVAVENGDDVRKEIEDTPTQVKMSKSASSSQKKFPSKLKDLLDSGILEGLPVNYVRGMKARGETGLRGVIRGNGIVCYCESCNGVEVVTPTVFELHAGSTNKRPPEYICLENGNTLRDIMNTCLNIPLDNLEEAVQKVLGGFTMKKSTFCLNCRDVSVVSRLLCNSCWGLKDCQPSPTRTTEASNSRVSQAVPCRSPEPVVLPKSLNNGMKHSTSRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYARGKQQLVGYKKGFGIFCSCCDCEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSINDNDDLCSICQDGGDLLCCDGCPRTFHIDCVPLPWIPSGTWYCKYCQNVFQKERYVEHNANAVAAGRIAGIDPLEQINQRCIRIVKTYEVDHGGCALCREQDFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQSLEELPEGNWFCCSDCDQIHTALLNLVAHREENLPDSLLSLIKKKHEEKGLGTEAGLDIKWRVLNWKLVASDETRQLLSKAVAIFHERFDPIIDSTSRLDFIPTMLYGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRVFGQEVAELPLVATNKDCQGQGYFQALFSCIEGVLGSLKVKHLVLPAADEAESIWTSKFGFTKLDKEEINNYKRWYRMMIFQGTSLLQKPVPAL* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01021 893 ProSitePatterns Zinc finger PHD-type signature. 536 575 IPR019786 -
Rops3g01021 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 681 IPR013083 -
Rops3g01021 893 Gene3D - 720 888 - -
Rops3g01021 893 MobiDBLite consensus disorder prediction 60 134 - -
Rops3g01021 893 SUPERFAMILY FYVE/PHD zinc finger 615 676 IPR011011 -
Rops3g01021 893 CDD PHD1_AIRE 535 575 - -
Rops3g01021 893 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 779 880 IPR016181 -
Rops3g01021 893 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 602 IPR013083 -
Rops3g01021 893 ProSiteProfiles Zinc finger PHD-type profile. 533 578 IPR019787 -
Rops3g01021 893 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 730 891 IPR000182 GO:0016747
Rops3g01021 893 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 522 599 - -
Rops3g01021 893 FunFam PHD finger family protein 720 889 - -
Rops3g01021 893 SUPERFAMILY FYVE/PHD zinc finger 522 578 IPR011011 -
Rops3g01021 893 MobiDBLite consensus disorder prediction 105 134 - -
Rops3g01021 893 PANTHER AUTOIMMUNE REGULATOR 57 890 - -
Rops3g01021 893 Pfam PHD-finger 536 577 IPR019787 -
Rops3g01021 893 SMART PHD_3 535 576 IPR001965 -
Rops3g01021 893 SMART PHD_3 623 679 IPR001965 -
Rops3g01021 893 Pfam Tify domain binding domain 469 517 IPR032308 -
Rops3g01021 893 Pfam Tify domain binding domain 279 334 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01021 Rops-Chr3 13212001 13217905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01021 180 890 PHD Transcription Factor Family AT2G36720 44.189 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops3g01021 TDBD 5.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01021 - - aprc:113859749 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00625 7 8126630 8134063 Rops3g01021 3 13212001 13217905 PCT