Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01020 ATGGGTCAGATCCAGTACTCCGAGAAGTATTTCGATGATACTTATGAGTATAGGCATGTGGTTCTGCCACCTGAAGTCGCCAAATTGCTTCCTAAGAATCGGCTTCTCTCAGAAAATGAATGGCGCGCAATTGGGGTTCAGCAGAGTCGTGGTTGGGTTCATTATGCAATTCATCGTCCTGAACCACACATAATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAGAACCAGGCCCAGCAGAGCATGCTTGTCAAATGA 267 0.4682 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQSMLVK* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01020 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 84 - -
Rops3g01020 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Rops3g01020 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Rops3g01020 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Rops3g01020 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Rops3g01020 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Rops3g01020 88 Gene3D - 1 84 IPR036858 GO:0016538
Rops3g01020 88 SMART CKS_2 3 72 IPR000789 GO:0016538
Rops3g01020 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Rops3g01020 88 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Rops3g01020 88 SUPERFAMILY Cell cycle regulatory proteins 1 82 IPR036858 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01020 Rops-Chr3 13208450 13209606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01020 1 88 Core Cell Cycle Gene Families AT2G27960 95.455 3.08e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01020 K02219 - gmx:100786340 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01020 3 13208450 13209606 Rops3g01020 3 13208450 13209606 ECH