Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01018 ATGATGCCAAAGATCACAACTGGCTTCTCAAATGCCTCTCAAGGGCTACAGATGTTTCCCGTGACAGAAGAATATCTGGTTTCACCCTCCGTTGAAGTAAACTCTGACTCAGGTTCATACTCTAGTTCCCTACTCTTCTATCTCTCTGATCTAAAAGACAAGCTTAGTCAGCTGCAGAACCTGGTGGGAGTGCTGGTTTCCCCTGAACAGAACCTACCCGAGTCAACTTCCATGGCCAGATCCACCATGAACTCCACAATCCAAGAACTCATAGATGCAGCCACTTCAATGAGCTTCACCTGCCAGCAGATGACTCTAATTGGTTCCAATCAAGGTACTACTGCTTGTACTAACGAATTGCGCCAGCAACAATTTGATCATGATAGGTTACCACCACATCAATTAAACTTTGGCAATAATAGAGGTGTGCTTAGTAACATGGGCTCAGATATCAGAGGGCAAAGTTTCGATTCTGCTAGTACTGAGGTAGAGGCACTACACTGGTTTGCTAAAAGCTATAATCATGATCATAATGATAATAATAGTAATTGTAACCTCAAGGATAATGATCAATGTGTTGCTACATGTGAAGCCACTTATAGTATGGGGGGATTGTCACCAGGGAATGAAATGGATATAACTGAATTGGATGCTGGGGATTTGTTGGCAAGGTACACATATTTTTGCCATGTTTGTGGGAAAGGATTTAAGCGTGATGCGAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACCAATGAAGCATTAATCAACCCAATGAAAAATAAAGGGAGCTTGGGTGAGGGAACTACAAGTATGAAGCCCACGAAATATTCATGCCCTCATGAAGGGTGTAGGTGGAATCAAAAACATGCCAGGTTCAAGCCCTTGAAGTCAATGGTTTGTGTGAAAAATCATTACAAGAGAAACCATTGCCCCAAAATGTATATGTGCAAAAGGTGCAACCAAAAACAGTACTCGGTGCTTTCTGATTTGAGGACCCATGAGAAGCACTGTGGGAACCCCAGGTGGCAGTGCTCGTGTGGCACTACATTTTCAAGGAAAGACAAGCTTATGGGTCACGTTGCTGTATTCGTGGGGCACACACCAAGTTTATCAGTGGCTTGTCAGAACAATAGGCATGGTAGCAACATATCGGTGGTAGTTCAAGATAATTAA 1188 0.431 MMPKITTGFSNASQGLQMFPVTEEYLVSPSVEVNSDSGSYSSSLLFYLSDLKDKLSQLQNLVGVLVSPEQNLPESTSMARSTMNSTIQELIDAATSMSFTCQQMTLIGSNQGTTACTNELRQQQFDHDRLPPHQLNFGNNRGVLSNMGSDIRGQSFDSASTEVEALHWFAKSYNHDHNDNNSNCNLKDNDQCVATCEATYSMGGLSPGNEMDITELDAGDLLARYTYFCHVCGKGFKRDANLRMHMRAHGEEYKTNEALINPMKNKGSLGEGTTSMKPTKYSCPHEGCRWNQKHARFKPLKSMVCVKNHYKRNHCPKMYMCKRCNQKQYSVLSDLRTHEKHCGNPRWQCSCGTTFSRKDKLMGHVAVFVGHTPSLSVACQNNRHGSNISVVVQDN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01018 395 FunFam Zinc finger 45-like 226 250 - -
Rops3g01018 395 Gene3D Classic Zinc Finger 212 286 - -
Rops3g01018 395 SUPERFAMILY beta-beta-alpha zinc fingers 225 252 IPR036236 -
Rops3g01018 395 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 36 379 IPR044300 GO:0010044|GO:0010447
Rops3g01018 395 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Rops3g01018 395 SMART c2h2final6 227 249 IPR013087 -
Rops3g01018 395 SMART c2h2final6 281 314 IPR013087 -
Rops3g01018 395 SMART c2h2final6 319 341 IPR013087 -
Rops3g01018 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01018 Rops-Chr3 13186009 13187196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01018 41 374 C2H2 Transcription Factor Family AT5G22890 47.399 2.68e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01018 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01018 - - gmx:100803120 427.557