Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01016 ATGGATATGGAAGGCTTGGGCACTGAAGAACAATTGATGGGTTTGTCCAACAACGATGCCACTTACATCGTGAAGGGCAAACGCACCAAAAGGTTGAGGCTTTTATCTCCTTGTGGTGTTGCTGCTGCTATCACCACCGCCATGACATCTAGTTGTTCAAGTGATGGGTCATTTTCTTCAACTGCAACCACTGCTGATCAAGAAGAAGAAGACATGGCTAATTGCTTGATCCTCTTAGCTCAAGGAGGAAGCCAATCTCATCATCATCAAAAGCAACAACAACCTGAACATGATCATGGTGAAAAGGGTAGCACTAGTAGCAACCGAAGATTCACTGAGATGGCAACTCCTAACGCCATGAATAACAATACCAATACCAAAGTTGGTTTTTATATTTATGAGTGCAAAACTTGTAACCGAACCTTTCCTTCATTTCAAGCACTAGGGGGACACAGGGCAAGTCACAAAAAATCCAAACTGATGGCTGAGGAGAAAAAACCACCATCACCATCACCACCACCACCACTGCTGCCACCACCATCATCATCACCATCATCACAAACAAAAATGTTTGATGATGAATTTGAAGAAGCAGGGAAACCACCCCTCATGAAAATTGGCCCTCCAATTTCTCTTCAATTGGGGAGTCAAAATCAAAATCACAGAGCTTTCCATGGTAACAAGGCCAAGATTCACGAGTGTTCTATTTGTGGCTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGAAGGCATAGGGCATCATCATCATCCACAAACAACACCACCGAGTCTAGTTTCAAAGCCACCACCACCGCCACCGCCATCGCAGCCGCTCAGCCCCGGAATATTTTACAATTGGATCTTAACCTTCCGGCGCCGGAAGATGACCTCCGGGAATCAAAGTTTCAGTTTTCGGCAACACAAAAATCTATGGTGCTGTCTGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 984 0.4533 MDMEGLGTEEQLMGLSNNDATYIVKGKRTKRLRLLSPCGVAAAITTAMTSSCSSDGSFSSTATTADQEEEDMANCLILLAQGGSQSHHHQKQQQPEHDHGEKGSTSSNRRFTEMATPNAMNNNTNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKSKLMAEEKKPPSPSPPPPLLPPPSSSPSSQTKMFDDEFEEAGKPPLMKIGPPISLQLGSQNQNHRAFHGNKAKIHECSICGSEFTSGQALGGHMRRHRASSSSTNNTTESSFKATTTATAIAAAQPRNILQLDLNLPAPEDDLRESKFQFSATQKSMVLSAAPALVDCHY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01016 327 Gene3D Classic Zinc Finger 214 284 - -
Rops3g01016 327 Pfam C2H2-type zinc finger 133 157 - -
Rops3g01016 327 Pfam C2H2-type zinc finger 232 256 - -
Rops3g01016 327 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Rops3g01016 327 MobiDBLite consensus disorder prediction 166 182 - -
Rops3g01016 327 MobiDBLite consensus disorder prediction 82 109 - -
Rops3g01016 327 MobiDBLite consensus disorder prediction 90 106 - -
Rops3g01016 327 PANTHER ZINC FINGER PROTEIN ZAT5 54 311 - -
Rops3g01016 327 SMART c2h2final6 232 254 IPR013087 -
Rops3g01016 327 SMART c2h2final6 133 155 IPR013087 -
Rops3g01016 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Rops3g01016 327 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Rops3g01016 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Rops3g01016 327 MobiDBLite consensus disorder prediction 149 191 - -
Rops3g01016 327 SUPERFAMILY beta-beta-alpha zinc fingers 132 254 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01016 Rops-Chr3 13134474 13135605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01016 18 327 C2H2 Transcription Factor Family AT2G28200 43.505 5.61e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g01016 zf-C2H2_6 2.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01016 - - aprc:113858527 305.064