Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops3g01014 | ATGGACACAATGGATTTTCATCCAGAAACTCTAGAGCACATTAATGACTTTGAGCTGCATGATTTCATTGACAATCCAAACTTTGATCAGTTTATTGATTTGATTCGTGGGGAGAATAAAGATGCTATTTGTAACTTCAGTTCTGATCTTATGAATGGCTGTTTCATTGATAACTCATTCCTTTCAAGCCCTCCAAACCCATTTGATCAGTGCAATAGTAATTCTGTGAATGTTTATGATCCAACCTCTACACTAAGCTCCTTCTCTTGTTTTGATGGGGAGGTCAAAGAGGGAGGAGAAGAAGAAGAAGAAAATGATGGTGAGGATTCTTCTGGAACAACAACCATCACCACAGCAACTACAACGAAACCAGGGGATAAAACTGATAGGTCCAAGACTTTGGTTTCTGAGAGGAGGAGGAGAGGGAGAATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCTAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATGTGCATGATCTTCAAGCACAAGCCAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCAAAAGATTATCAAGGATCAATTGAAAACCCCATAAAGGTTCAATTCACAAACAACAGCCGTTCAATCTGCAAGAAGATCACCCAGATGGACATGTTTCAAGTGGATGAAAGAGGGTTTTATGTGAAAATAGTATGCAATAAGGGAGAAGGTGTGGCTGCCTCCCTGTACAAGTCTCTTGAATCTCTGACAGGATTCAATGTTCAGAATTCAAACTTGGCCACAATTTCTGACAGTTTTCTACTTACATTTTCATTGAATGTCAAAGGCTCTGAGCTAGAAATTAACCTGCCCAATTTGAAGCTATGGGTGACTGGCGCTTTTCTGAATCAAGGCTTTGAATTCATAACTTCTTTTCATGCCTGA | 957 | 0.3981 | MDTMDFHPETLEHINDFELHDFIDNPNFDQFIDLIRGENKDAICNFSSDLMNGCFIDNSFLSSPPNPFDQCNSNSVNVYDPTSTLSSFSCFDGEVKEGGEEEEENDGEDSSGTTTITTATTTKPGDKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASLLVSKDYQGSIENPIKVQFTNNSRSICKKITQMDMFQVDERGFYVKIVCNKGEGVAASLYKSLESLTGFNVQNSNLATISDSFLLTFSLNVKGSELEINLPNLKLWVTGAFLNQGFEFITSFHA* | 319 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops3g01014 | 318 | SMART | finulus | 134 | 183 | IPR011598 | GO:0046983 | |
| Rops3g01014 | 318 | MobiDBLite | consensus disorder prediction | 90 | 140 | - | - | |
| Rops3g01014 | 318 | Coils | Coil | 174 | 194 | - | - | |
| Rops3g01014 | 318 | Gene3D | - | 120 | 194 | IPR036638 | GO:0046983 | |
| Rops3g01014 | 318 | Pfam | Helix-loop-helix DNA-binding domain | 136 | 178 | IPR011598 | GO:0046983 | |
| Rops3g01014 | 318 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 128 | 177 | IPR011598 | GO:0046983 | |
| Rops3g01014 | 318 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 125 | 194 | - | - | |
| Rops3g01014 | 318 | MobiDBLite | consensus disorder prediction | 125 | 140 | - | - | |
| Rops3g01014 | 318 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 15 | 308 | - | - | |
| Rops3g01014 | 318 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 126 | 193 | IPR036638 | GO:0046983 | |
| Rops3g01014 | 318 | MobiDBLite | consensus disorder prediction | 110 | 124 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops3g01014 | Rops-Chr3 | 13080575 | 13082510 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops3g01014 | 4 | 310 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G28160 | 56.250 | 1.46e-107 | 314 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Rops3g01014 | HLH | 2.5e-09 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops3g01014 | K26214 | - | gmx:100805451 | 434.491 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops7g00631 | 7 | 8234805 | 8236780 | Rops3g01014 | 3 | 13080575 | 13082510 | PCT |