Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01013 ATGGAAACCACTGCACAGGTTGTTGTTTCCTCTACTTCGCTTATATCAGAGTCCTCTGAATCCAACCCAACACACTTTTCTTCTATGGAACTTGGAATTATGAATTTCGGCTGCACGCATTACAGAAGGAGATGCAAGATCATAGCACCGTGTTGTAATGAGGTTTTTGACTGTAGGCATTGCCACAACGAAGCTAAGAACTCAGAGGAGGTTGATCCTCTTGATCGTCATGATATCCCACGCCATGAGATTAAAAAGGTCATCTGCTCCTTATGTGATACAGAACAAGATATTCAACAGTACTGCATAAACTGTGGAGTATGCATGGGCAAGTACTTTTGTTCTACATGCAAATTCTTCGATGATGATATTTCAAAGAACCAATACCACTGTGACGAATGTGGCATCTGCAGAATTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTGGATGTTGCTACTCCAAGGTAATGGAAAAGGGGCACCGTTGTGTAGAAAAAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACAGTTAGAGATATTACTGTCTTACCTTGCGGGCATACTATACATTTAGAGTGTGTTAAAGAGATGGAACAGCATCATAGGTACTCATGTCCTGTTTGTTCAAAATCCATCTGTGACATGTCAAATTTGTGGAAGAAGCTTGATGAAGTGATTGCCTCAACTCCAATGCCTGAAACTTACAAAAATAAGAAGGTGTGGATACTGTGCAATGATTGTGGAGTAAACTCTAATGTGCAATTCCACATTGTGGCTCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAGGGAATACCTTCTAATTCATGCTCTTCTGGGGTGGCTGGTATGAATTCTTTTGATGATATGGCTGCTCTAGATTGA 921 0.405 METTAQVVVSSTSLISESSESNPTHFSSMELGIMNFGCTHYRRRCKIIAPCCNEVFDCRHCHNEAKNSEEVDPLDRHDIPRHEIKKVICSLCDTEQDIQQYCINCGVCMGKYFCSTCKFFDDDISKNQYHCDECGICRIGGKDNFFHCKRCGCCYSKVMEKGHRCVEKAMHHNCPVCFEYLFDTVRDITVLPCGHTIHLECVKEMEQHHRYSCPVCSKSICDMSNLWKKLDEVIASTPMPETYKNKKVWILCNDCGVNSNVQFHIVAHKCLSCNSYNTRQIQGIPSNSCSSGVAGMNSFDDMAALD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01013 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 282 - -
Rops3g01013 306 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Rops3g01013 306 SUPERFAMILY RING/U-box 173 220 - -
Rops3g01013 306 SUPERFAMILY CHY zinc finger-like 35 109 IPR037274 GO:0008270
Rops3g01013 306 Pfam RING-type zinc-finger 174 214 IPR027370 -
Rops3g01013 306 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Rops3g01013 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 247 IPR013083 -
Rops3g01013 306 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Rops3g01013 306 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Rops3g01013 306 SMART ring_2 174 216 IPR001841 -
Rops3g01013 306 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Rops3g01013 306 Gene3D - 248 286 - -
Rops3g01013 306 Pfam Zinc-ribbon 221 279 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01013 Rops-Chr3 13054452 13056941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01013 36 291 C2H2 Transcription Factor Family AT3G18290 39.773 2.31e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01013 K10144 - gmx:100812709 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01013 3 13054452 13056941 Rops3g01013 3 13054452 13056941 ECH