Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01010 ATGTCTAAGCAGCCACCGCCCTCCGCCTTCGACGCCCTAATGTCCGGCGCCCGCGCCGCCGCCTCCAAGAAGAACAAACCGTCGCTCACTTCCCTATCCCCCAAGAAAAGAAAGTCCCCACACCCCGAACCCCCCGCACAAAACCCTAACAACCTCAAAACCCCCGAAACCGTTACAACCGTCCAACCGTCCAACAAACCCCAAGAAACCGTTAAGACAGAACCGCCAAAGAAGATTCTCAAAACTTCCATCACCGCGGAACTGAAGGAACGGGTTTCACAACTGAAGAATAAGCCCTCTGATTTCGATCCCAATTCTGTTGCATGCTGGGAGAAGAACAAACCCGTGCCGTTTCTTTTCCTCTGTTTGGCCTTTGATATGATCGCTGATGAGACTGGGAGGATCGTGATGACTGACATTGTGTGCAACATGTTGAGGACTGTGATTCACGCCACGCCGGAGGATCTCGTGCCGGTGGTTTATCTCTCCGCGAACAGGATTGCTCCGGCGCATGAAGGTTTGGAATTGGGAATCGGTGACGCTTCGATAATCAAGGCTCTTGCTGAGGCGTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTATAAGGAGAAAGGTGACTTGGGGTTAGTTGCCAAAGCGAGTCGTTCTTCTCAGTCTATGATGAGGAAGCCTGATGCATTGACTATTAGGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCTGGAAAAGACAGTCAAGAAAAGAAAAAGAACCATATAAAGTCACTTCTGGTTGCTGCCACTGACTGTGAACCTCTATATCTAATTCGTTTGCTACAGACAAAGTTGCGAATTGGATATGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACCGAAGAACATTCTAAACCGCCTCCTGAAATTAAGTCTCCTTTAGAAGAGGCTTCGAAGATTGTAAAACAAGCATATTCTGTTCTTCCTGACTATGACAAGATAGTGTCTGCACTGCTTACGGGTGGTGTATGGATACTTCCAAAGTCATGTAATTTTACTCCTGGGGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACAAAGGGTGTATCTGAAGTTCTGAATAAATTCCAGGATGTAGAGTTTACCTGTGAATACAAATACGATGGAGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGCAGAAATGCAGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACTGTATCATCATTTGTTCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAAAATCCTTCCTTTCCAGGTGCTTAGTACTCGGGCTCGCAAAAATGTAGCTTTGAGTGACATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGACAAGCACTTCTTCAGGACAACCTGAAAATCCGTAGAGAGCATCTCTATGCCTCTTTTGAAGAAGAATCTGGATTTCTTCAGTTTGCAACATCAATAACATCAAATGATGTTGAGGAAATACAGAAATTTCTTGACGAAGCTGTTGAAGCAAGTTGTGAGGGATTAATTATTAAAACATTAAATGAAGATGCTACGTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAGGATTATCTGGAAAATATAGGGGACTCACTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGGGGGAAACGTACAGGAGGCTATGGTGCCTTTCTCCTTGCTTGCTATGACCACAATAATGAAGAATTTCAAAGTATCTGTAAGATAGGAACTGGATTCTCTGATAAAATGCTTGAAGAACGTTCTGCTAGCCTTGGCTGTAAAGTGATTCCCATGCCGAAGGCATACTATCGATATGCAGAAACAATCAATCCTGATGTCTGGTTTGAAGCGAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTCCCGTGCTGCAGTGGGCATAGTAGACTCGGATAAGGGCATATCTCTTCGATTTCCTCGTCTTCTTCGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCATCATCTGAGCAGGTATAGTGCAATCTTCATGATAAGGACCTAAGTAATATGGGATGCCAAAAGTCTCACATTGAGTAGTATGAGCTGTTTGGTGATGTATTTAAGTGGGCTTGGTAATAGCTAACTTTTAAGGGAGGGTTCCCCGAACCAAGCCACTTAAATACACCACCAAACAGCCCATACTATTCGATAGTAATTGGGGAAAGGGAAAATGGAATTAATTGGTCATTCTTTACTCGTTTTCAGATTGCTGAAATGTATAAGGCTCAGACACACAATCCAACGACCAATCAAGATGGCAATGAAGATGATTGA 2430 0.4424 MSKQPPPSAFDALMSGARAAASKKNKPSLTSLSPKKRKSPHPEPPAQNPNNLKTPETVTTVQPSNKPQETVKTEPPKKILKTSITAELKERVSQLKNKPSDFDPNSVACWEKNKPVPFLFLCLAFDMIADETGRIVMTDIVCNMLRTVIHATPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTESQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPLEEASKIVKQAYSVLPDYDKIVSALLTGGVWILPKSCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFVLDCELVAYDRAKQKILPFQVLSTRARKNVALSDIKVDVCIFAFDLLYLNGQALLQDNLKIRREHLYASFEEESGFLQFATSITSNDVEEIQKFLDEAVEASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIGAFHGRGKRTGGYGAFLLACYDHNNEEFQSICKIGTGFSDKMLEERSASLGCKVIPMPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVSRAAVGIVDSDKGISLRFPRLLRVRPDKAPEQASSSEQV*CNLHDKDLSNMGCQKSHIE*YELFGDVFKWAW**LTFKGGFPEPSHLNTPPNSPYYSIVIGERENGINWSFFTRFQIAEMYKAQTHNPTTNQDGNEDD* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01010 805 Gene3D - 92 361 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops3g01010 805 Gene3D - 568 726 IPR012340 -
Rops3g01010 805 FunFam DNA ligase 359 565 - -
Rops3g01010 805 NCBIfam ATP-dependent DNA ligase 175 713 IPR000977 GO:0003910|GO:0005524|GO:0071897
Rops3g01010 805 SUPERFAMILY Nucleic acid-binding proteins 571 715 IPR012340 -
Rops3g01010 805 ProSitePatterns ATP-dependent DNA ligase signature 2. 537 563 IPR016059 GO:0003909
Rops3g01010 805 CDD OBF_DNA_ligase_I 571 713 - -
Rops3g01010 805 Pfam DNA ligase N terminus 117 292 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops3g01010 805 Pfam ATP dependent DNA ligase C terminal region 588 699 IPR012309 GO:0003910|GO:0006281|GO:0006310
Rops3g01010 805 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 26 717 - -
Rops3g01010 805 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 98 349 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Rops3g01010 805 Gene3D - 369 567 - -
Rops3g01010 805 Pfam ATP dependent DNA ligase domain 359 563 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops3g01010 805 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 383 391 IPR016059 GO:0003909
Rops3g01010 805 FunFam DNA ligase 568 726 - -
Rops3g01010 805 FunFam DNA ligase 94 361 - -
Rops3g01010 805 ProSiteProfiles ATP-dependent DNA ligase family profile. 465 601 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Rops3g01010 805 CDD Adenylation_DNA_ligase_I_Euk 349 566 - -
Rops3g01010 805 MobiDBLite consensus disorder prediction 1 75 - -
Rops3g01010 805 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 351 569 - -
Rops3g01010 805 MobiDBLite consensus disorder prediction 50 70 - -
Rops3g01010 805 Gene3D DNA ligase/mRNA capping enzyme 388 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01010 Rops-Chr3 13022587 13029889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01010 7 735 Core DNA Replication Machinery Family AT1G08130 67.914 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01010 K10747 - gmx:100783155 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01010 3 13022587 13029889 Rops3g01010 3 13022587 13029889 ECH