Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01006 ATGAGGAACAACACCAAGAATGGTTTTGTGGATTTCCTAGTGCAAGTAATTCGAGGGCGATGGTTCATGCTTTTTGCCTCCTTCCTTGTCTTGTCAGGAGCTGGAGGCATGTATCTATTTGGAACCTATTCTGGTGCAATCAAAGCTTCTCAAGGTTACGATCAAAGCACCCTCAACCTTCTTAGCTTTTTCAAGAACATTTCCCTTGGCATTCTCAGTGGCCTAATTGCTGAGGTAACTCCAACATGGTTTGTTCTCCTTCTTGGCTCAGTTTTGAACTTTGGAGGCTATTTCATGATCTGGCTTGCTGTTACTCACAGAATTTCCAAGCCCAAAATTTGGCAGATGTGTCTCTATATTTGTATTGGTTCCAATTCTCAGAACTTTGTCAACACAGGAGCATTAGTCCCATGTGTCAACAATTTCCCTGAAAGTAGAGGTGTGTTGATGGGTCTCTTGAAGGGTTATATTGGACTCAGTGGAGCTGTTTTGACCCAATTTTATTTGGCTATTTATGGGAATGATTCTGGATCTCTAATCCTTCTTATTGCATGGTTACCTTCTGTTTTGATAGTGTTGTTTCTTTTTACTATTCGGGTCATTAAGGTTCATAGGCAGCCATATGAGGTTAAAATCTTCTACAAACTCATGTATGTGTCAGTTGCACTTGCCATATTTATCATGGTAATGATCATTGTTCAGAGACGTTTTGTTTTCTCCCATAAGGCCTATATTGGAAGTGCCACTGTTGTTTGTGCTCTACTATTAACTCCTGTCCTTGTTGGGATGAAGGAGGAGTTTTTACTATGGAATCTAAAGAAGAAAAATAATGACCATCCCACTCGAATTGAGGTAATTTCAGATGAGCCATCCATGGTTGAATCTGAATCCAACCCAATTGCACCCTCTTCAGTGGAAAGAGATCAACTAGAGCAACCAAAAAAATCATGTTTTGCTGACATTTTTAATAAACCTGAAAGAGGTGAAGATTATACCATTTTACAGGCACTTCTAAGCATTGACATGTTACTACTGATGATTGGTACAACTTGTGGGTTAGGATCAAGCATGGCAGCTATGGACAATTTAGGACAAATTGGTGAATCATTGGAGTACCCTGCAAGCACAATAAGCTCATTTGTGTCCATTGTAAGTATTTGGAATTACTTTGGAAGGGTCTTTTCTGGTTATGTATCTGAAGTTTTTATTCAAAAACACAAAGTTCCTCGCCCCTTAATTTTGACCCTTGTGCTCATCTTATCATGCATTGGCCAACTCCTTATTGCATTCCCAGCTCCAGGTTCAATCTATGCAGCATCAATCATAATCGGGTTTTGTTATGGTGCACAGTTCCCTGTGGTCAATGCAACTGTTTCTGAGCTATTTGGTCTTAAACACTTTGCAACATTGTTCAATTGTGTGTATATTTTTTGTCCCATTGGATCATATGTCTTGAATGTCACTGTGACAGGGTTGCTTTATGATAAAGAAGCGAAAAAGTTGCTCAAAAAAAGTGGCAAAGTGTTTGTGGAGGGAATGGAGTTGACTTGTATTGGACCTGAATGTTTCAAGCTTACTTGCATAATAACAGCATCTGTCACTATGTTTGCAGCATTGGTTTCGTTGGTTTTGGTGATAAGAACTCGAGAGTTCTACAAAGGTGACATATACAAGAAGTTTGGGGACAATACTATAGCTTCACAAACACAGGTGGCTGCATCAACTGCTCAAGAAGACTGA 1740 0.3954 MRNNTKNGFVDFLVQVIRGRWFMLFASFLVLSGAGGMYLFGTYSGAIKASQGYDQSTLNLLSFFKNISLGILSGLIAEVTPTWFVLLLGSVLNFGGYFMIWLAVTHRISKPKIWQMCLYICIGSNSQNFVNTGALVPCVNNFPESRGVLMGLLKGYIGLSGAVLTQFYLAIYGNDSGSLILLIAWLPSVLIVLFLFTIRVIKVHRQPYEVKIFYKLMYVSVALAIFIMVMIIVQRRFVFSHKAYIGSATVVCALLLTPVLVGMKEEFLLWNLKKKNNDHPTRIEVISDEPSMVESESNPIAPSSVERDQLEQPKKSCFADIFNKPERGEDYTILQALLSIDMLLLMIGTTCGLGSSMAAMDNLGQIGESLEYPASTISSFVSIVSIWNYFGRVFSGYVSEVFIQKHKVPRPLILTLVLILSCIGQLLIAFPAPGSIYAASIIIGFCYGAQFPVVNATVSELFGLKHFATLFNCVYIFCPIGSYVLNVTVTGLLYDKEAKKLLKKSGKVFVEGMELTCIGPECFKLTCIITASVTMFAALVSLVLVIRTREFYKGDIYKKFGDNTIASQTQVAASTAQED* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01006 579 CDD MFS_Mch1p_like 19 538 - -
Rops3g01006 579 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 21 555 - -
Rops3g01006 579 Pfam Nodulin-like 20 262 IPR010658 -
Rops3g01006 579 SUPERFAMILY MFS general substrate transporter 19 550 IPR036259 -
Rops3g01006 579 Gene3D MFS general substrate transporter like domains 330 553 IPR036259 -
Rops3g01006 579 Pfam Major Facilitator Superfamily 348 546 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01006 Rops-Chr3 12983661 12985400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01006 10 563 Nodulin-like Gene Family AT2G28120 59.712 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01006 - - oeu:111382427 711.449