Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00993 ATGCAGAGATCAGGTTACGGTAGCGACGGAATATACAGGTCTCTTAGGCCATCCCTGTTGCTCCCTAAGGACTCCAACCTCTCCCTCGTCTCATTCCTTTTCACTAACGTCTCTTCTTTCCCAACCAAACCCGCCCTCGTCGATGACGACTCTTCCCAAACACTCTCCTTCGCACAACTCAAATCCAAAGTCGCTAAACTCGCACACGGTTTCATTAAACTCGGCATAAACAAAAACGACGTCGTCCTCCTCCTCGCTCCTAACAGCATCCACTTCCCTATATGCTTCCTCGCCGTAACCGCCATCGGCGCCGTCGTCTCCACCGCCAACCCTCTTTACACCGTCGCGGAACTCTCCAGGCAAGTCAAGGATTCCAAACCCAAGCTCGTGATCACCGTCCCCGACTTATTGAACAAAGTGAAAGGTTTCAACCTTCCCACGGTGATCATCGGCTCAGATCACGCCGCGTGTCCGAATCTCCCGAGTTTAAATGTGTTGATGGAGATGGCGGGAACGGTTACAGAGTTGCCGGAAAACGACGTGAAACAGAGCGATACGGCGGCACTTTTGTACTCTTCGGGAACCACGGGGGTGAGCAAGGGAGTGATTCTCACTCACCGGAACTTCATCGCGGCATCGTTGATGGTTGGCATGGACGATGATTTGGCCGGTGAGTTTAACGGCGTGTTCCTCTGCGTTTTGCCGATGGTTCTTATCTCCGGGCTTGCCGTAGTGACGTACTCGCAGCTCCGGCGAGGGAGCACGGTGGTGTCGATGGGGAGGTTTGAGTTCGAGGCGTTTTTGAAGGCCATTGAGAAGCACAAGGTGACGAATCTTTGGCTCATGCCTCCGATAGTGCTTGCTCTGGTGAAACAGAGTGTGGTTAGGGACTATGATCTTTCTTCTTTGAAGTATATTGGTTCTGGTGCTGCTCCTCTTCGGAAAGAGTTGATGGAAGACTGTGCCAAACAAACTTGTGCCGTTGTTTCTATGGAGAATCCAAGAGTAGGGATTCGTCACACTGGTTCAGCTGGAATGCTGGTTTCAGGGGTTGAAGCTCAAATAGTGAGTGTGGACACAGAGAAGCCGCTCCCTCCAAAGCAGTTGGGAGAAGTATGGGTACGAGGTCCTAACATGATGCCAGGTTATCTTAACAACCCACAGGCCACAAGATTGACTATAGATAAAAAGGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGACAACTTTATATTGTTGACCGTTTGAAAGAACTGATCAAGTGTGAAGGTCTTCAGGTTGCCCCAGCTGAACTTGAAGGGCTTCTCATTTCTCACCCTGAAATCCTAGATGCTGCTGTCGTACCATATCCAGATGATGTGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCACCCAACAGTTCACTGACTGCAGAAGAAGTTCAGAAATTTGTAGCTAATCAGGTTGCACCATACAAAAGATTGCGAAGGGTGACATTCATCAACAGTGTTCCTAAGACAACTTCAGGAAAAATTCTCAGAAGAGAGCTTATTGCAAAGGCACAATCCAAAATATAA 1575 0.4914 MQRSGYGSDGIYRSLRPSLLLPKDSNLSLVSFLFTNVSSFPTKPALVDDDSSQTLSFAQLKSKVAKLAHGFIKLGINKNDVVLLLAPNSIHFPICFLAVTAIGAVVSTANPLYTVAELSRQVKDSKPKLVITVPDLLNKVKGFNLPTVIIGSDHAACPNLPSLNVLMEMAGTVTELPENDVKQSDTAALLYSSGTTGVSKGVILTHRNFIAASLMVGMDDDLAGEFNGVFLCVLPMVLISGLAVVTYSQLRRGSTVVSMGRFEFEAFLKAIEKHKVTNLWLMPPIVLALVKQSVVRDYDLSSLKYIGSGAAPLRKELMEDCAKQTCAVVSMENPRVGIRHTGSAGMLVSGVEAQIVSVDTEKPLPPKQLGEVWVRGPNMMPGYLNNPQATRLTIDKKGWVHTGDLGYFDEDGQLYIVDRLKELIKCEGLQVAPAELEGLLISHPEILDAAVVPYPDDVAGEVPIAYVVRSPNSSLTAEEVQKFVANQVAPYKRLRRVTFINSVPKTTSGKILRRELIAKAQSKI* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00993 524 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 518 - -
Rops3g00993 524 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Rops3g00993 524 Pfam AMP-binding enzyme 35 426 IPR000873 -
Rops3g00993 524 FunFam 4-coumarate--CoA ligase 2 422 523 - -
Rops3g00993 524 SUPERFAMILY Acetyl-CoA synthetase-like 23 522 - -
Rops3g00993 524 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 421 - -
Rops3g00993 524 CDD 4CL 21 516 - -
Rops3g00993 524 Pfam AMP-binding enzyme C-terminal domain 435 510 IPR025110 -
Rops3g00993 524 Gene3D - 422 523 IPR045851 -
Rops3g00993 524 Gene3D - 10 421 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00993 Rops-Chr3 12790110 12794940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00993 1 524 Monolignol Biosynthesis Gene Families AT4G05160 65.441 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00993 K01904 - gmx:100808944 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00640 7 8386723 8391372 Rops3g00993 3 12790110 12794940 PCT