Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00992 ATGCATAGATCAGGTTACAGTAGCGACGGAATATACAGGTCACTTAGGCCATCCCTGTTGCTCCCAAAGGACCCCAACCTCTCTCTCGTCTCATTTCTTTTCACTAACGTCTCTTCTTTCCCAACCAAACGCGCCCTTATCGATGCCGACTCTTCCGAAACCCTCTCCTTCGCTCGACTCAAATCCAAAATCGCTAAACTCGCACACGGTTTCATTAAACTCGGCATAAACAAAAACGACGTCGTCCTCCTCCTCGCTCCCAACAGCATCCACTTCCCTATATGCTTCTTCGCCGTAACCGCCATCGGAGCCGTCGTCTCCACCGCCAACCCTCTTTACACCGTCGCCGAACTCTCCAGACAAATCAACGATTCCAAACCCAAGCTCGTGATCACTGTCCCTCAATTATGGAACAAACTGAAAGGTTTCAACCTTCCCACGGTGATCATTGGCTCAGATCACGCCACGTGTCCGAATCTCACGACTTTCAACGCGTTGATACAACTGGCGGGAACGGTTACAGAGTTGCCGGAAAACGACGTGAAACAGAGCGATACGGCGGCGCTTCTGTATTCTTCGGGAACCACGGGGGTTAGCAAGGGAGTGATCCTCACTCACCGGAACTTCATCGCGGCGTCGTTAATGATTGGCATTGACGACGATTTGGCAGGGGAGTTTAACGGCGTGTTCCTCTGCGTTTTGCCGATGTTTCACGTGTTCGGGCTCGCCGTCGTGACGTACTCGCAGCTCCGGCGAGGGAGCACGGTGGTGTCGATGGGGAAGTTCGAGAACTATGATCTTTCTTCGTTGAAGTATATTGGTTCTGGTGCTGCTCCACTTGGGAAAGAGTTGATGGAAGATTGTTCCAAACGCTTCCCTCATGTTACCATTTATCAGGGCTATGGTATGACAGAAACTTGTGCCGTTGTTTCTATAGAAAATCCAAGAGTAGGGATTCGTCACAGTGGTTCAGCTGGAATACTGGTTTCAGGGGTTGAAGCTCAAATAGTGACTGTGGACACGGAGAAGCCGCTCCCTCCAAAACAGTTGGGGGAATTATGGGTACGAGGTCCTAACATGATGCAAGGTTATCATAACAACCCAGAGGCCACAAGATTGACTATAGATAAAAAGGGGTGGGTACATACAGGAGATCTTGGCTATTTTGATGAGGATGGACAACTTTATATTGTTGACCGTTTGAAAGAACTGATAAAGTATAAAGGTCTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCATTTCTCACCCTGAAATCCTAGATGCTGCTGTCGTACCATATCCGGATGATGTGGCCGGTGAGGTTCCAATTGCCTATGTTGTTCGTTCAACCAACAGTTCACTGACTGAAGAAGAAGTTCAGAAATTTGTAGCTAATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTGACATTCATCAACGGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAAAGCTTATTGCAATGGCACAATCCAAAATATAA 1518 0.4802 MHRSGYSSDGIYRSLRPSLLLPKDPNLSLVSFLFTNVSSFPTKRALIDADSSETLSFARLKSKIAKLAHGFIKLGINKNDVVLLLAPNSIHFPICFFAVTAIGAVVSTANPLYTVAELSRQINDSKPKLVITVPQLWNKLKGFNLPTVIIGSDHATCPNLTTFNALIQLAGTVTELPENDVKQSDTAALLYSSGTTGVSKGVILTHRNFIAASLMIGIDDDLAGEFNGVFLCVLPMFHVFGLAVVTYSQLRRGSTVVSMGKFENYDLSSLKYIGSGAAPLGKELMEDCSKRFPHVTIYQGYGMTETCAVVSIENPRVGIRHSGSAGILVSGVEAQIVTVDTEKPLPPKQLGELWVRGPNMMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYIVDRLKELIKYKGLQVAPAELEGLLISHPEILDAAVVPYPDDVAGEVPIAYVVRSTNSSLTEEEVQKFVANQVAPFKRLRRVTFINGVPKTASGKILRRKLIAMAQSKI* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00992 505 SUPERFAMILY Acetyl-CoA synthetase-like 22 503 - -
Rops3g00992 505 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Rops3g00992 505 Gene3D - 403 505 IPR045851 -
Rops3g00992 505 Pfam AMP-binding enzyme C-terminal domain 416 491 IPR025110 -
Rops3g00992 505 Gene3D - 7 262 IPR042099 -
Rops3g00992 505 Pfam AMP-binding enzyme 263 407 IPR000873 -
Rops3g00992 505 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 264 498 - -
Rops3g00992 505 FunFam 4-coumarate--CoA ligase 2 403 504 - -
Rops3g00992 505 Gene3D - 263 402 IPR042099 -
Rops3g00992 505 CDD 4CL 21 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00992 Rops-Chr3 12769089 12773940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00992 1 505 Monolignol Biosynthesis Gene Families AT4G05160 63.051 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00992 K01904 - gmx:100808944 787.719