Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00990 ATGGTGTCTGACGCCAGCAAGAAGAAGGTAGCACAGAAGAAGGCCGCCGCTGCCGCCAAGAGAGGCGGAAAAGCCGCAGCGTCTTCCAAATCCGCCGCCAGTAAGGCTGCCGACAAGGTCGCCGACAAAATTGCCGATATTCAAATATCAGATCGGACCTGCACCGGAATCTTATGCTCTCATCCTCTTTCCAGGGATATTAGGATAGAGTCTCTGTCAGTTACTTTCCATGGACACGATCTCATAGTTGATTCTGAATTGGAGTTAAATTATGGAAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCTACTCTGCTTACGGCAATAGGTTGCCGGGAACTTCCGATTCCCGACCACATGGATATTTTTCACCTAAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAACTGTGATGAGGAAAGGTTGATATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAGGATGATGGAGGCGGTGAATCCCTTGAACGCATCTATGAACGATTGGAAGCCCTAGATGTATCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTCGGTTTCAACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGAATTGCATTAGCAAGAGCTCTGTTTATGAACCCTACCATTCTTCTACTTGATGAACCAACTAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGACCGTATTCTGGTTGTGGTTTCACACTCTCAGGACTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAACAAAACACTGAAGCCCTACACTGGTAACTATGATCAATATGTTCAGACACGTGGTGAATTGGAAGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACAGAGAAGGTGGCCAGAGACCAAGTTTTAGTATTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGACTTTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGACTTAGACTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGAGTTGATTCCCAATGATGGCATGGTCCGGCGTCATAATCATCTTCGAATTGCACAATATCATCAGCACTTGGCTGAAAAGCTAGACTTGGAAATGTCTGCTCTCCAGTATATGATAAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCAGCTATTGGGAAGTTTGGACTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAACTTGTCCGATGGGCAAAGGAGTCGTGTGGTATTCGCGTGGTTAGCTTGGAGGCAGCCTCAGATGCTACTCTTGGATGAGCCAACTAATCATTTGGATATTGAAACCATTGACTCATTGGCCGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCACATGAGATATGGGTGTGTGCTAATCAATCTGTGACCCGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAAGTCGAAGTCGGGTTTATCCGATTGA 1782 0.4545 MVSDASKKKVAQKKAAAAAKRGGKAAASSKSAASKAADKVADKIADIQISDRTCTGILCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIFHLSREIEASDMSALEAVINCDEERLILEKEAETLAAQDDGGGESLERIYERLEALDVSTAEKRAAEILHGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKTLKPYTGNYDQYVQTRGELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDQVLVFRFTDVGKLPPPVLQFVEVTFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELIPNDGMVRRHNHLRIAQYHQHLAEKLDLEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVVFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKEHLKSKSGLSD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00990 593 Gene3D - 341 591 IPR027417 -
Rops3g00990 593 Pfam ABC transporter 394 525 IPR003439 GO:0005524
Rops3g00990 593 CDD ABCF_EF-3 67 284 - -
Rops3g00990 593 MobiDBLite consensus disorder prediction 1 34 - -
Rops3g00990 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524|GO:0016887
Rops3g00990 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
Rops3g00990 593 SMART AAA_5 403 591 IPR003593 GO:0016887
Rops3g00990 593 SMART AAA_5 91 284 IPR003593 GO:0016887
Rops3g00990 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 302 IPR027417 -
Rops3g00990 593 Gene3D - 67 331 IPR027417 -
Rops3g00990 593 FunFam ATP-binding cassette sub-family F member 3 338 592 - -
Rops3g00990 593 Pfam ABC transporter 278 355 IPR032781 -
Rops3g00990 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 572 IPR027417 -
Rops3g00990 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 20 588 - -
Rops3g00990 593 CDD ABCF_EF-3 378 569 - -
Rops3g00990 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Rops3g00990 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Rops3g00990 593 FunFam Abc transporter f family member 1 67 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00990 Rops-Chr3 12716771 12720713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00990 378 565 Calmodulin-binding Proteins AT2G36910 24.771 5.66e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00990 K06185 - gmx:100809491 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00643 7 8419740 8431932 Rops3g00990 3 12716771 12720713 PCT