Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00986 ATGCATGGAGTAACAGGAAGGGAACAAACCTTCATGGCCTCAGTTCCTTCCCCAATGGTCCCAACTGATACCACAGCCAAATTTGCTTTACCAGTTGATTCTGAGCACAAAGCAAAAGTTTTCAAACTGTTTTCCTTTGCCAATCCCCACATGAGAACCTTCCACTTATCTTGGATATCTTTCTTCACTTGCTTTGTCTCAACCTTTGCAGCTGCTCCACTTGTCCCTATCATCCGTGATAACCTTGACCTTACCAAAAGTGATGTTGGGAATGCTGGGGTTGCTTCTGTTTCAGGAAGTATATTTTCTAGGCTTACAATGGGTGTAGTTTGTGACCTCTTAGGTCCACGTTATGGCTGTGCCTTCCTTATCATGTTTACTGCCCCAACTGTGTTCTGCATGTCATTTGTGAACGATGCAGCAGGATATATAGCAGTTAGGTTCATGATTGGATTCTCTTTGGCCACTTTTGTTTCATGCCAATACTGGATGAGCACCATGTTTAACAGTAAGATTATAGGGCTTGCAAATGGGACAGCAGCAGGGTGGGGTAACATGGGTGGTGGAGCCACTCAGCTCATAATGCCATTGGTGTATGAATTGATCAGGAGAGCTGGGGCTACTCCTTTCACTGCTTGGAGAGTTGCCTTCTTCATCCCTGGTTGGTTGCATGTCATCATGGGGATCTTGGTCTTAACACTAGGCCAAGATTTACCTGATGGCAACCTTGGTGCTTTACAGAAGAAGGGCAATGTTGCTAAAGACAAGTTCTCCAAGGTGTTATGGTATGCCATCACAAATTACAGGACATGGGTTTTTGCACTCCTATATGGGTACTCTATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTCAAGCTACACACTGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAACCTTGTTGCTCGCCCCTTTGGTGGATATGCATCTGATGTTGCAGCTCGGTTGTTTGGAATGAGAGGAAGGCTTTGGACCCTTTGGATCCTCCAAACACTTGGAGGGGCTTTCTGTATATGGCTTGGTCGTGCCAATTCACTTCCAATTGCTGTAGTGGCTATGATCCTCTTCTCTATTGGAGCTCAAGCTGCTTGTGGTGCAACTTTTGGCATCATTCCTTTCATCTCAAGAAGGTCTTTGGGGATTATATCAGGTCTAACTGGTGCAGGTGGCAACTTTGGGTCTGGTTTGACCCAGTTGATCTTCTTTTCAACTTCCAAATTTTCAACATCAGCAGGTCTCTCTTGGATGGGTGTCATGATTGTAGGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAAGATGTCAAAAAATGCACTGAAGAACACTATTACACTTCTGAATGGAATGAAGAGGAGCAACAAAAGGGTTTGCACCAAAAAAGTCTCAAGTTTGCTGAGAATAGCCGTTCTGAGAGAGGCAAACGTGTGGCTTCTGCAGCAACACCTCCAAATACAACTCCAACCCATATCTAG 1560 0.4474 MHGVTGREQTFMASVPSPMVPTDTTAKFALPVDSEHKAKVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLDLTKSDVGNAGVASVSGSIFSRLTMGVVCDLLGPRYGCAFLIMFTAPTVFCMSFVNDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLANGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRVAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVAKDKFSKVLWYAITNYRTWVFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWILQTLGGAFCIWLGRANSLPIAVVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSKFSTSAGLSWMGVMIVGCTLPVTLVHFPQWGSMFLPPSKDVKKCTEEHYYTSEWNEEEQQKGLHQKSLKFAENSRSERGKRVASAATPPNTTPTHI* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00986 519 FunFam High affinity nitrate transporter 46 243 - -
Rops3g00986 519 CDD MFS_NRT2_like 54 447 IPR044772 GO:0015112
Rops3g00986 519 Gene3D MFS general substrate transporter like domains 253 455 IPR036259 -
Rops3g00986 519 ProSiteProfiles Major facilitator superfamily (MFS) profile. 53 447 IPR020846 GO:0022857
Rops3g00986 519 SUPERFAMILY MFS general substrate transporter 48 448 IPR036259 -
Rops3g00986 519 FunFam Nitrate transporter 2.1 254 455 - -
Rops3g00986 519 MobiDBLite consensus disorder prediction 479 519 - -
Rops3g00986 519 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 6 505 IPR044772 GO:0015112
Rops3g00986 519 MobiDBLite consensus disorder prediction 479 502 - -
Rops3g00986 519 Pfam Major Facilitator Superfamily 58 414 IPR011701 GO:0022857|GO:0055085
Rops3g00986 519 Gene3D MFS general substrate transporter like domains 46 242 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00986 Rops-Chr3 12686421 12688348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00986 1 519 Inorganic Solute Cotransporters AT1G08090 80.154 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00986 K02575 - gmx:100807710 962.985